(21 nodes) HEAT, type 2 network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y8Q6_BRAFL	Uncharacterized protein. (835 aa)
	C3Y9V8_BRAFL	Uncharacterized protein. (658 aa)
	C3YB04_BRAFL	TIR domain-containing protein. (542 aa)
	C3Z790_BRAFL	Uncharacterized protein. (674 aa)
	C3ZBN8_BRAFL	WRNPLPNID domain-containing protein. (881 aa)
	C3ZKP4_BRAFL	Protein kinase domain-containing protein. (862 aa)
	C3ZLL7_BRAFL	DUF3385 domain-containing protein. (1400 aa)
	C3ZQY9_BRAFL	Uncharacterized protein. (1147 aa)
	C3ZYW7_BRAFL	Uncharacterized protein. (1334 aa)
	C3XS17_BRAFL	Uncharacterized protein. (598 aa)
	C3XYM7_BRAFL	Uncharacterized protein. (1314 aa)
	C3YQP5_BRAFL	Uncharacterized protein. (116 aa)
	C3YIH6_BRAFL	BP28CT domain-containing protein. (2129 aa)
	C3YGI2_BRAFL	Importin N-terminal domain-containing protein. (1022 aa)
	C3YGF1_BRAFL	LisH domain-containing protein. (1087 aa)
	C3YE60_BRAFL	Importin N-terminal domain-containing protein. (951 aa)
	C3YE46_BRAFL	Importin N-terminal domain-containing protein. (951 aa)
	C3YDA5_BRAFL	Uncharacterized protein. (340 aa)
	C3YVY7_BRAFL	TOG domain-containing protein. (2576 aa)
	C3XZB4_BRAFL	Uncharacterized protein. (672 aa)
	C3XZG6_BRAFL	TOG domain-containing protein. (292 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XS17_BRAFL	C3ZBN8_BRAFL	C3XS17	C3ZBN8	Uncharacterized protein.	WRNPLPNID domain-containing protein.	0.479
C3XYM7_BRAFL	C3ZYW7_BRAFL	C3XYM7	C3ZYW7	Uncharacterized protein.	Uncharacterized protein.	0.543
C3XZB4_BRAFL	C3ZBN8_BRAFL	C3XZB4	C3ZBN8	Uncharacterized protein.	WRNPLPNID domain-containing protein.	0.528
C3YE46_BRAFL	C3YGI2_BRAFL	C3YE46	C3YGI2	Importin N-terminal domain-containing protein.	Importin N-terminal domain-containing protein.	0.683
C3YE60_BRAFL	C3YGI2_BRAFL	C3YE60	C3YGI2	Importin N-terminal domain-containing protein.	Importin N-terminal domain-containing protein.	0.683
C3YGI2_BRAFL	C3YE46_BRAFL	C3YGI2	C3YE46	Importin N-terminal domain-containing protein.	Importin N-terminal domain-containing protein.	0.683
C3YGI2_BRAFL	C3YE60_BRAFL	C3YGI2	C3YE60	Importin N-terminal domain-containing protein.	Importin N-terminal domain-containing protein.	0.683
C3YGI2_BRAFL	C3YIH6_BRAFL	C3YGI2	C3YIH6	Importin N-terminal domain-containing protein.	BP28CT domain-containing protein.	0.532
C3YIH6_BRAFL	C3YGI2_BRAFL	C3YIH6	C3YGI2	BP28CT domain-containing protein.	Importin N-terminal domain-containing protein.	0.532
C3YIH6_BRAFL	C3YVY7_BRAFL	C3YIH6	C3YVY7	BP28CT domain-containing protein.	TOG domain-containing protein.	0.587
C3YVY7_BRAFL	C3YIH6_BRAFL	C3YVY7	C3YIH6	TOG domain-containing protein.	BP28CT domain-containing protein.	0.587
C3Z790_BRAFL	C3ZLL7_BRAFL	C3Z790	C3ZLL7	Uncharacterized protein.	DUF3385 domain-containing protein.	0.691
C3ZBN8_BRAFL	C3XS17_BRAFL	C3ZBN8	C3XS17	WRNPLPNID domain-containing protein.	Uncharacterized protein.	0.479
C3ZBN8_BRAFL	C3XZB4_BRAFL	C3ZBN8	C3XZB4	WRNPLPNID domain-containing protein.	Uncharacterized protein.	0.528
C3ZLL7_BRAFL	C3Z790_BRAFL	C3ZLL7	C3Z790	DUF3385 domain-containing protein.	Uncharacterized protein.	0.691
C3ZYW7_BRAFL	C3XYM7_BRAFL	C3ZYW7	C3XYM7	Uncharacterized protein.	Uncharacterized protein.	0.543