(9 nodes) RNA-binding domain, S1 network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZQZ0_BRAFL	Uncharacterized protein. (172 aa)
	C3ZTA6_BRAFL	S1 motif domain-containing protein. (279 aa)
	C3Y166_BRAFL	S1 motif domain-containing protein. (289 aa)
	C3XRZ1_BRAFL	S1 motif domain-containing protein. (804 aa)
	C3YD45_BRAFL	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1823 aa)
	C3XPK3_BRAFL	Uncharacterized protein. (1638 aa)
	C3YYD6_BRAFL	Uncharacterized protein. (335 aa)
	C3Z2F7_BRAFL	S1 motif domain-containing protein. (723 aa)
	C3Y8A1_BRAFL	Uncharacterized protein. (226 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPK3_BRAFL	C3Y8A1_BRAFL	C3XPK3	C3Y8A1	Uncharacterized protein.	Uncharacterized protein.	0.694
C3XPK3_BRAFL	C3Z2F7_BRAFL	C3XPK3	C3Z2F7	Uncharacterized protein.	S1 motif domain-containing protein.	0.690
C3XPK3_BRAFL	C3ZTA6_BRAFL	C3XPK3	C3ZTA6	Uncharacterized protein.	S1 motif domain-containing protein.	0.836
C3XRZ1_BRAFL	C3ZQZ0_BRAFL	C3XRZ1	C3ZQZ0	S1 motif domain-containing protein.	Uncharacterized protein.	0.455
C3Y8A1_BRAFL	C3XPK3_BRAFL	C3Y8A1	C3XPK3	Uncharacterized protein.	Uncharacterized protein.	0.694
C3YD45_BRAFL	C3ZQZ0_BRAFL	C3YD45	C3ZQZ0	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	Uncharacterized protein.	0.953
C3Z2F7_BRAFL	C3XPK3_BRAFL	C3Z2F7	C3XPK3	S1 motif domain-containing protein.	Uncharacterized protein.	0.690
C3ZQZ0_BRAFL	C3XRZ1_BRAFL	C3ZQZ0	C3XRZ1	Uncharacterized protein.	S1 motif domain-containing protein.	0.455
C3ZQZ0_BRAFL	C3YD45_BRAFL	C3ZQZ0	C3YD45	Uncharacterized protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.953
C3ZTA6_BRAFL	C3XPK3_BRAFL	C3ZTA6	C3XPK3	S1 motif domain-containing protein.	Uncharacterized protein.	0.836