(7 nodes) TFIIS/LEDGF domain superfamily network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YT59_BRAFL	TFIIS N-terminal domain-containing protein. (593 aa)
	C3ZJ43_BRAFL	Uncharacterized protein. (210 aa)
	C3ZEM7_BRAFL	TFIIS N-terminal domain-containing protein. (295 aa)
	C3Z9K5_BRAFL	TFIIS N-terminal domain-containing protein. (712 aa)
	C3ZCT5_BRAFL	Uncharacterized protein. (588 aa)
	C3Z0T4_BRAFL	LEDGF domain-containing protein. (390 aa)
	C3Z0T2_BRAFL	LEDGF domain-containing protein. (330 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3YT59_BRAFL	C3ZEM7_BRAFL	C3YT59	C3ZEM7	TFIIS N-terminal domain-containing protein.	TFIIS N-terminal domain-containing protein.	0.706
C3Z9K5_BRAFL	C3ZEM7_BRAFL	C3Z9K5	C3ZEM7	TFIIS N-terminal domain-containing protein.	TFIIS N-terminal domain-containing protein.	0.778
C3ZCT5_BRAFL	C3ZEM7_BRAFL	C3ZCT5	C3ZEM7	Uncharacterized protein.	TFIIS N-terminal domain-containing protein.	0.778
C3ZEM7_BRAFL	C3YT59_BRAFL	C3ZEM7	C3YT59	TFIIS N-terminal domain-containing protein.	TFIIS N-terminal domain-containing protein.	0.706
C3ZEM7_BRAFL	C3Z9K5_BRAFL	C3ZEM7	C3Z9K5	TFIIS N-terminal domain-containing protein.	TFIIS N-terminal domain-containing protein.	0.778
C3ZEM7_BRAFL	C3ZCT5_BRAFL	C3ZEM7	C3ZCT5	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.778
C3ZEM7_BRAFL	C3ZJ43_BRAFL	C3ZEM7	C3ZJ43	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.706
C3ZJ43_BRAFL	C3ZEM7_BRAFL	C3ZJ43	C3ZEM7	Uncharacterized protein.	TFIIS N-terminal domain-containing protein.	0.706