(21 nodes) Dynein heavy chain, ATP-binding dynein motor region network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZNR3_BRAFL	Uncharacterized protein. (2622 aa)
	C3XV30_BRAFL	Uncharacterized protein. (4708 aa)
	C3XXR6_BRAFL	Uncharacterized protein. (697 aa)
	C3XZF8_BRAFL	AAA domain-containing protein. (2026 aa)
	C3Y600_BRAFL	Uncharacterized protein. (4244 aa)
	C3Y8Y3_BRAFL	Uncharacterized protein. (3769 aa)
	C3YA59_BRAFL	Uncharacterized protein. (4106 aa)
	C3YAU5_BRAFL	Uncharacterized protein. (1914 aa)
	C3YFZ1_BRAFL	Uncharacterized protein. (2894 aa)
	C3YI86_BRAFL	Uncharacterized protein. (5211 aa)
	C3YJ75_BRAFL	Uncharacterized protein. (1228 aa)
	C3YSF3_BRAFL	Uncharacterized protein. (2348 aa)
	C3YWV5_BRAFL	Uncharacterized protein. (4351 aa)
	C3YYU7_BRAFL	Uncharacterized protein. (836 aa)
	C3Z109_BRAFL	Uncharacterized protein. (4712 aa)
	C3Z2N9_BRAFL	Uncharacterized protein. (3453 aa)
	C3Z7I5_BRAFL	Uncharacterized protein. (4457 aa)
	C3ZE16_BRAFL	Uncharacterized protein. (336 aa)
	C3ZE17_BRAFL	Uncharacterized protein. (1365 aa)
	C3ZEM3_BRAFL	Uncharacterized protein. (1095 aa)
	C3ZKM4_BRAFL	Uncharacterized protein. (5712 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y600_BRAFL	C3YAU5_BRAFL	C3Y600	C3YAU5	Uncharacterized protein.	Uncharacterized protein.	0.546
C3Y600_BRAFL	C3YFZ1_BRAFL	C3Y600	C3YFZ1	Uncharacterized protein.	Uncharacterized protein.	0.546
C3Y600_BRAFL	C3YI86_BRAFL	C3Y600	C3YI86	Uncharacterized protein.	Uncharacterized protein.	0.578
C3Y600_BRAFL	C3YYU7_BRAFL	C3Y600	C3YYU7	Uncharacterized protein.	Uncharacterized protein.	0.546
C3Y600_BRAFL	C3Z109_BRAFL	C3Y600	C3Z109	Uncharacterized protein.	Uncharacterized protein.	0.547
C3Y600_BRAFL	C3ZE17_BRAFL	C3Y600	C3ZE17	Uncharacterized protein.	Uncharacterized protein.	0.562
C3Y600_BRAFL	C3ZNR3_BRAFL	C3Y600	C3ZNR3	Uncharacterized protein.	Uncharacterized protein.	0.548
C3YAU5_BRAFL	C3Y600_BRAFL	C3YAU5	C3Y600	Uncharacterized protein.	Uncharacterized protein.	0.546
C3YAU5_BRAFL	C3YFZ1_BRAFL	C3YAU5	C3YFZ1	Uncharacterized protein.	Uncharacterized protein.	0.554
C3YAU5_BRAFL	C3YI86_BRAFL	C3YAU5	C3YI86	Uncharacterized protein.	Uncharacterized protein.	0.540
C3YAU5_BRAFL	C3YYU7_BRAFL	C3YAU5	C3YYU7	Uncharacterized protein.	Uncharacterized protein.	0.547
C3YAU5_BRAFL	C3Z109_BRAFL	C3YAU5	C3Z109	Uncharacterized protein.	Uncharacterized protein.	0.546
C3YAU5_BRAFL	C3ZE17_BRAFL	C3YAU5	C3ZE17	Uncharacterized protein.	Uncharacterized protein.	0.546
C3YAU5_BRAFL	C3ZNR3_BRAFL	C3YAU5	C3ZNR3	Uncharacterized protein.	Uncharacterized protein.	0.546
C3YFZ1_BRAFL	C3Y600_BRAFL	C3YFZ1	C3Y600	Uncharacterized protein.	Uncharacterized protein.	0.546
C3YFZ1_BRAFL	C3YAU5_BRAFL	C3YFZ1	C3YAU5	Uncharacterized protein.	Uncharacterized protein.	0.554
C3YFZ1_BRAFL	C3YI86_BRAFL	C3YFZ1	C3YI86	Uncharacterized protein.	Uncharacterized protein.	0.540
C3YFZ1_BRAFL	C3YYU7_BRAFL	C3YFZ1	C3YYU7	Uncharacterized protein.	Uncharacterized protein.	0.551
C3YFZ1_BRAFL	C3Z109_BRAFL	C3YFZ1	C3Z109	Uncharacterized protein.	Uncharacterized protein.	0.546
C3YFZ1_BRAFL	C3ZE17_BRAFL	C3YFZ1	C3ZE17	Uncharacterized protein.	Uncharacterized protein.	0.546