(4 nodes) RNA polymerase, RBP11-like subunit network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YRU6_BRAFL	RNA_pol_L_2 domain-containing protein. (110 aa)
	C3Z918_BRAFL	RPOLD domain-containing protein. (275 aa)
	C3Z3J6_BRAFL	RPOLD domain-containing protein. (290 aa)
	C3YY41_BRAFL	RNA_pol_L_2 domain-containing protein. (117 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3YRU6_BRAFL	C3YY41_BRAFL	C3YRU6	C3YY41	RNA_pol_L_2 domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.733
C3YRU6_BRAFL	C3Z3J6_BRAFL	C3YRU6	C3Z3J6	RNA_pol_L_2 domain-containing protein.	RPOLD domain-containing protein.	0.999
C3YRU6_BRAFL	C3Z918_BRAFL	C3YRU6	C3Z918	RNA_pol_L_2 domain-containing protein.	RPOLD domain-containing protein.	0.997
C3YY41_BRAFL	C3YRU6_BRAFL	C3YY41	C3YRU6	RNA_pol_L_2 domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.733
C3YY41_BRAFL	C3Z3J6_BRAFL	C3YY41	C3Z3J6	RNA_pol_L_2 domain-containing protein.	RPOLD domain-containing protein.	0.984
C3YY41_BRAFL	C3Z918_BRAFL	C3YY41	C3Z918	RNA_pol_L_2 domain-containing protein.	RPOLD domain-containing protein.	0.999
C3Z3J6_BRAFL	C3YRU6_BRAFL	C3Z3J6	C3YRU6	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.999
C3Z3J6_BRAFL	C3YY41_BRAFL	C3Z3J6	C3YY41	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.984
C3Z3J6_BRAFL	C3Z918_BRAFL	C3Z3J6	C3Z918	RPOLD domain-containing protein.	RPOLD domain-containing protein.	0.664
C3Z918_BRAFL	C3YRU6_BRAFL	C3Z918	C3YRU6	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.997
C3Z918_BRAFL	C3YY41_BRAFL	C3Z918	C3YY41	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.999
C3Z918_BRAFL	C3Z3J6_BRAFL	C3Z918	C3Z3J6	RPOLD domain-containing protein.	RPOLD domain-containing protein.	0.664