40 items (Branchiostoma floridae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XVH1_BRAFL	Hydrolase_4 domain-containing protein. (267 aa)
	C3XVW4_BRAFL	Hydrolase_4 domain-containing protein. (270 aa)
	C3XVW5_BRAFL	C2H2-type domain-containing protein. (372 aa)
	C3XXK1_BRAFL	START domain-containing protein. (279 aa)
	C3XXR1_BRAFL	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (270 aa)
	C3Y130_BRAFL	START domain-containing protein. (219 aa)
	C3Y1A7_BRAFL	Uncharacterized protein. (1044 aa)
	C3Y1P9_BRAFL	AB hydrolase-1 domain-containing protein. (423 aa)
	C3Y2X7_BRAFL	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (765 aa)
	C3Y699_BRAFL	Carn_acyltransf domain-containing protein. (166 aa)
	C3YA84_BRAFL	LNS2 domain-containing protein. (872 aa)
	C3YCR1_BRAFL	Phosphatidylethanolamine N-methyltransferase; Catalyzes the three sequential steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylethanolamine (PE) to phosphatidylmonomethylethanolamine (PMME), PMME to phosphatidyldimethylethanolamine (PDME), and PDME to phosphatidylcholine (PC); Belongs to the class VI-like SAM-binding methyltransferase superfamily. PEMT/PEM2 methyltransferase family. (195 aa)
	C3YD34_BRAFL	Uncharacterized protein. (386 aa)
	C3YMT8_BRAFL	AB hydrolase-1 domain-containing protein. (388 aa)
	C3YMT9_BRAFL	AB hydrolase-1 domain-containing protein. (363 aa)
	C3YMU0_BRAFL	Hydrolase_4 domain-containing protein. (671 aa)
	C3YQQ1_BRAFL	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (654 aa)
	C3YSN9_BRAFL	Uncharacterized protein. (483 aa)
	C3Z1G5_BRAFL	Uncharacterized protein. (897 aa)
	C3Z1G7_BRAFL	Uncharacterized protein. (335 aa)
	C3Z1N8_BRAFL	COesterase domain-containing protein. (621 aa)
	C3Z1T7_BRAFL	Uncharacterized protein. (362 aa)
	C3Z402_BRAFL	Phosphatidylethanolamine N-methyltransferase; Catalyzes the three sequential steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylethanolamine (PE) to phosphatidylmonomethylethanolamine (PMME), PMME to phosphatidyldimethylethanolamine (PDME), and PDME to phosphatidylcholine (PC); Belongs to the class VI-like SAM-binding methyltransferase superfamily. PEMT/PEM2 methyltransferase family. (196 aa)
	C3Z4L6_BRAFL	Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family. (610 aa)
	C3Z6M5_BRAFL	Uncharacterized protein. (410 aa)
	C3Z8V9_BRAFL	COesterase domain-containing protein. (180 aa)
	C3Z8W9_BRAFL	START domain-containing protein. (402 aa)
	C3Z901_BRAFL	Uncharacterized protein. (295 aa)
	C3ZBD9_BRAFL	Uncharacterized protein. (286 aa)
	C3ZBE3_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (367 aa)
	C3ZDY8_BRAFL	CTP_transf_like domain-containing protein. (279 aa)
	C3ZHY7_BRAFL	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (227 aa)
	C3ZI74_BRAFL	Uncharacterized protein. (405 aa)
	C3ZK77_BRAFL	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (375 aa)
	C3ZNC3_BRAFL	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (656 aa)
	C3ZQY7_BRAFL	Uncharacterized protein. (239 aa)
	C3ZV37_BRAFL	Uncharacterized protein. (576 aa)
	C3ZZ86_BRAFL	Uncharacterized protein. (206 aa)
	C4A0B1_BRAFL	Uncharacterized protein. (269 aa)
	C4A0B2_BRAFL	Uncharacterized protein. (146 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XXK1_BRAFL	C3Y130_BRAFL	C3XXK1	C3Y130	START domain-containing protein.	START domain-containing protein.	0.410
C3XXK1_BRAFL	C3Z8W9_BRAFL	C3XXK1	C3Z8W9	START domain-containing protein.	START domain-containing protein.	0.707
C3XXR1_BRAFL	C3ZDY8_BRAFL	C3XXR1	C3ZDY8	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	CTP_transf_like domain-containing protein.	0.549
C3Y130_BRAFL	C3XXK1_BRAFL	C3Y130	C3XXK1	START domain-containing protein.	START domain-containing protein.	0.410
C3YA84_BRAFL	C3Z1T7_BRAFL	C3YA84	C3Z1T7	LNS2 domain-containing protein.	Uncharacterized protein.	0.658
C3YA84_BRAFL	C3ZDY8_BRAFL	C3YA84	C3ZDY8	LNS2 domain-containing protein.	CTP_transf_like domain-containing protein.	0.553
C3YCR1_BRAFL	C3Z402_BRAFL	C3YCR1	C3Z402	Phosphatidylethanolamine N-methyltransferase; Catalyzes the three sequential steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylethanolamine (PE) to phosphatidylmonomethylethanolamine (PMME), PMME to phosphatidyldimethylethanolamine (PDME), and PDME to phosphatidylcholine (PC); Belongs to the class VI-like SAM-binding methyltransferase superfamily. PEMT/PEM2 methyltransferase family.	Phosphatidylethanolamine N-methyltransferase; Catalyzes the three sequential steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylethanolamine (PE) to phosphatidylmonomethylethanolamine (PMME), PMME to phosphatidyldimethylethanolamine (PDME), and PDME to phosphatidylcholine (PC); Belongs to the class VI-like SAM-binding methyltransferase superfamily. PEMT/PEM2 methyltransferase family.	0.902
C3YCR1_BRAFL	C3ZDY8_BRAFL	C3YCR1	C3ZDY8	Phosphatidylethanolamine N-methyltransferase; Catalyzes the three sequential steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylethanolamine (PE) to phosphatidylmonomethylethanolamine (PMME), PMME to phosphatidyldimethylethanolamine (PDME), and PDME to phosphatidylcholine (PC); Belongs to the class VI-like SAM-binding methyltransferase superfamily. PEMT/PEM2 methyltransferase family.	CTP_transf_like domain-containing protein.	0.460
C3YCR1_BRAFL	C3ZZ86_BRAFL	C3YCR1	C3ZZ86	Phosphatidylethanolamine N-methyltransferase; Catalyzes the three sequential steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylethanolamine (PE) to phosphatidylmonomethylethanolamine (PMME), PMME to phosphatidyldimethylethanolamine (PDME), and PDME to phosphatidylcholine (PC); Belongs to the class VI-like SAM-binding methyltransferase superfamily. PEMT/PEM2 methyltransferase family.	Uncharacterized protein.	0.932
C3YD34_BRAFL	C3ZI74_BRAFL	C3YD34	C3ZI74	Uncharacterized protein.	Uncharacterized protein.	0.485
C3YD34_BRAFL	C4A0B2_BRAFL	C3YD34	C4A0B2	Uncharacterized protein.	Uncharacterized protein.	0.492
C3Z1T7_BRAFL	C3YA84_BRAFL	C3Z1T7	C3YA84	Uncharacterized protein.	LNS2 domain-containing protein.	0.658
C3Z1T7_BRAFL	C3Z4L6_BRAFL	C3Z1T7	C3Z4L6	Uncharacterized protein.	Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family.	0.901
C3Z1T7_BRAFL	C3ZDY8_BRAFL	C3Z1T7	C3ZDY8	Uncharacterized protein.	CTP_transf_like domain-containing protein.	0.995
C3Z402_BRAFL	C3YCR1_BRAFL	C3Z402	C3YCR1	Phosphatidylethanolamine N-methyltransferase; Catalyzes the three sequential steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylethanolamine (PE) to phosphatidylmonomethylethanolamine (PMME), PMME to phosphatidyldimethylethanolamine (PDME), and PDME to phosphatidylcholine (PC); Belongs to the class VI-like SAM-binding methyltransferase superfamily. PEMT/PEM2 methyltransferase family.	Phosphatidylethanolamine N-methyltransferase; Catalyzes the three sequential steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylethanolamine (PE) to phosphatidylmonomethylethanolamine (PMME), PMME to phosphatidyldimethylethanolamine (PDME), and PDME to phosphatidylcholine (PC); Belongs to the class VI-like SAM-binding methyltransferase superfamily. PEMT/PEM2 methyltransferase family.	0.902
C3Z402_BRAFL	C3ZDY8_BRAFL	C3Z402	C3ZDY8	Phosphatidylethanolamine N-methyltransferase; Catalyzes the three sequential steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylethanolamine (PE) to phosphatidylmonomethylethanolamine (PMME), PMME to phosphatidyldimethylethanolamine (PDME), and PDME to phosphatidylcholine (PC); Belongs to the class VI-like SAM-binding methyltransferase superfamily. PEMT/PEM2 methyltransferase family.	CTP_transf_like domain-containing protein.	0.460
C3Z402_BRAFL	C3ZZ86_BRAFL	C3Z402	C3ZZ86	Phosphatidylethanolamine N-methyltransferase; Catalyzes the three sequential steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylethanolamine (PE) to phosphatidylmonomethylethanolamine (PMME), PMME to phosphatidyldimethylethanolamine (PDME), and PDME to phosphatidylcholine (PC); Belongs to the class VI-like SAM-binding methyltransferase superfamily. PEMT/PEM2 methyltransferase family.	Uncharacterized protein.	0.932
C3Z4L6_BRAFL	C3Z1T7_BRAFL	C3Z4L6	C3Z1T7	Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family.	Uncharacterized protein.	0.901
C3Z8W9_BRAFL	C3XXK1_BRAFL	C3Z8W9	C3XXK1	START domain-containing protein.	START domain-containing protein.	0.707
C3ZBE3_BRAFL	C3ZHY7_BRAFL	C3ZBE3	C3ZHY7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.999