(46 nodes) Transport of Mature mRNA Derived from an Intronless Transcript network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y1B7_BRAFL	Uncharacterized protein. (1507 aa)
	C4A119_BRAFL	Uncharacterized protein. (414 aa)
	C3ZZL1_BRAFL	Uncharacterized protein. (489 aa)
	C3ZWP7_BRAFL	Uncharacterized protein. (489 aa)
	C3ZQV8_BRAFL	RanBD1 domain-containing protein. (130 aa)
	C3ZP64_BRAFL	Uncharacterized protein. (1316 aa)
	C3ZP63_BRAFL	Uncharacterized protein. (824 aa)
	C3ZK41_BRAFL	RanBD1 domain-containing protein. (358 aa)
	C3ZHQ1_BRAFL	Uncharacterized protein. (203 aa)
	C3ZGS7_BRAFL	C3H1-type domain-containing protein. (466 aa)
	C3ZEZ4_BRAFL	Uncharacterized protein. (3724 aa)
	C3ZEZ0_BRAFL	RanBD1 domain-containing protein. (490 aa)
	C3ZDE1_BRAFL	Uncharacterized protein; Belongs to the WD repeat SEC13 family. (323 aa)
	C3ZBF7_BRAFL	Nuclear pore protein. (815 aa)
	C3ZBB9_BRAFL	Uncharacterized protein. (340 aa)
	C3Z810_BRAFL	Uncharacterized protein. (1766 aa)
	C3Z710_BRAFL	RRM domain-containing protein. (236 aa)
	C3Z4B2_BRAFL	Uncharacterized protein. (733 aa)
	C3Z3J7_BRAFL	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (316 aa)
	C3Z1R7_BRAFL	Uncharacterized protein. (1406 aa)
	C3YXC1_BRAFL	WD_REPEATS_REGION domain-containing protein. (383 aa)
	C3YVL3_BRAFL	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (318 aa)
	C3YRI5_BRAFL	WD_REPEATS_REGION domain-containing protein. (303 aa)
	C3YRI3_BRAFL	Uncharacterized protein. (979 aa)
	C3YN20_BRAFL	Uncharacterized protein. (687 aa)
	C3YM21_BRAFL	Uncharacterized protein. (1384 aa)
	C3YJZ1_BRAFL	Nuclear cap-binding protein subunit 2. (140 aa)
	C3YJ30_BRAFL	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (758 aa)
	C3YJ29_BRAFL	Uncharacterized protein. (131 aa)
	C3YI99_BRAFL	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (108 aa)
	C3YA87_BRAFL	Cleavage and polyadenylation specificity factor subunit 2. (607 aa)
	C3Y997_BRAFL	Uncharacterized protein. (300 aa)
	C3Y917_BRAFL	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (750 aa)
	C3Y7F0_BRAFL	Uncharacterized protein. (1053 aa)
	C3Y7E9_BRAFL	Uncharacterized protein. (716 aa)
	C3Y7A7_BRAFL	WD_REPEATS_REGION domain-containing protein. (320 aa)
	C3Y3D6_BRAFL	Nsp1_C domain-containing protein. (421 aa)
	C3Y2C6_BRAFL	MIF4G domain-containing protein. (689 aa)
	C3Y029_BRAFL	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (227 aa)
	C3XZJ8_BRAFL	Uncharacterized protein. (1087 aa)
	C3XWM0_BRAFL	Uncharacterized protein. (314 aa)
	C3XWA2_BRAFL	Peptidase S59 domain-containing protein. (1834 aa)
	C3XV32_BRAFL	Uncharacterized protein. (457 aa)
	C3XUG9_BRAFL	Uncharacterized protein. (318 aa)
	C3XUG8_BRAFL	CPSF_A domain-containing protein. (1003 aa)
	C3XRH9_BRAFL	Nucleoporin_C domain-containing protein. (822 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRH9_BRAFL	C3XUG8_BRAFL	C3XRH9	C3XUG8	Nucleoporin_C domain-containing protein.	CPSF_A domain-containing protein.	0.569
C3XRH9_BRAFL	C3XUG9_BRAFL	C3XRH9	C3XUG9	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.569
C3XRH9_BRAFL	C3XV32_BRAFL	C3XRH9	C3XV32	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.864
C3XRH9_BRAFL	C3XWA2_BRAFL	C3XRH9	C3XWA2	Nucleoporin_C domain-containing protein.	Peptidase S59 domain-containing protein.	0.998
C3XRH9_BRAFL	C3XWM0_BRAFL	C3XRH9	C3XWM0	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.970
C3XRH9_BRAFL	C3Y1B7_BRAFL	C3XRH9	C3Y1B7	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.987
C3XRH9_BRAFL	C3Y2C6_BRAFL	C3XRH9	C3Y2C6	Nucleoporin_C domain-containing protein.	MIF4G domain-containing protein.	0.749
C3XRH9_BRAFL	C3Y3D6_BRAFL	C3XRH9	C3Y3D6	Nucleoporin_C domain-containing protein.	Nsp1_C domain-containing protein.	0.976
C3XRH9_BRAFL	C3Y7A7_BRAFL	C3XRH9	C3Y7A7	Nucleoporin_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
C3XRH9_BRAFL	C3Y7E9_BRAFL	C3XRH9	C3Y7E9	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.858
C3XRH9_BRAFL	C3Y7F0_BRAFL	C3XRH9	C3Y7F0	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.858
C3XRH9_BRAFL	C3Y917_BRAFL	C3XRH9	C3Y917	Nucleoporin_C domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
C3XRH9_BRAFL	C3Y997_BRAFL	C3XRH9	C3Y997	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.630
C3XRH9_BRAFL	C3YA87_BRAFL	C3XRH9	C3YA87	Nucleoporin_C domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.656
C3XRH9_BRAFL	C3YJ29_BRAFL	C3XRH9	C3YJ29	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.989
C3XRH9_BRAFL	C3YJ30_BRAFL	C3XRH9	C3YJ30	Nucleoporin_C domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.995
C3XRH9_BRAFL	C3YJZ1_BRAFL	C3XRH9	C3YJZ1	Nucleoporin_C domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.691
C3XRH9_BRAFL	C3YM21_BRAFL	C3XRH9	C3YM21	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.993
C3XRH9_BRAFL	C3YN20_BRAFL	C3XRH9	C3YN20	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.644
C3XRH9_BRAFL	C3YRI3_BRAFL	C3XRH9	C3YRI3	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.525