(23 nodes) Signaling by NOTCH1 network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y389_BRAFL	Uncharacterized protein. (143 aa)
	C3XPV3_BRAFL	Uncharacterized protein. (261 aa)
	C3XPV4_BRAFL	Uncharacterized protein. (286 aa)
	C3XPV5_BRAFL	Uncharacterized protein. (268 aa)
	C3Y2C9_BRAFL	Uncharacterized protein. (609 aa)
	C3Y388_BRAFL	DUF4704 domain-containing protein. (880 aa)
	C3Y391_BRAFL	Uncharacterized protein. (736 aa)
	C3Y611_BRAFL	Uncharacterized protein. (557 aa)
	C3YQC8_BRAFL	Uncharacterized protein. (279 aa)
	C3YR35_BRAFL	Uncharacterized protein. (271 aa)
	C3YR36_BRAFL	Uncharacterized protein. (290 aa)
	C3YR39_BRAFL	Uncharacterized protein. (291 aa)
	C3YR42_BRAFL	Uncharacterized protein. (300 aa)
	C3YRC2_BRAFL	Uncharacterized protein. (508 aa)
	C3YU00_BRAFL	Uncharacterized protein. (740 aa)
	C3YZM3_BRAFL	MamL-1 domain-containing protein. (858 aa)
	C3YZR5_BRAFL	Uncharacterized protein. (600 aa)
	C3Z994_BRAFL	Uncharacterized protein. (557 aa)
	C3ZDF9_BRAFL	Uncharacterized protein. (426 aa)
	C3ZHP6_BRAFL	NHR domain-containing protein. (118 aa)
	C3ZIK9_BRAFL	Uncharacterized protein. (334 aa)
	C3ZYS3_BRAFL	Uncharacterized protein. (652 aa)
	C3ZYV2_BRAFL	Uncharacterized protein. (370 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y2C9_BRAFL	C3YZR5_BRAFL	C3Y2C9	C3YZR5	Uncharacterized protein.	Uncharacterized protein.	0.900
C3Y2C9_BRAFL	C3Z994_BRAFL	C3Y2C9	C3Z994	Uncharacterized protein.	Uncharacterized protein.	0.521
C3Y388_BRAFL	C3Y389_BRAFL	C3Y388	C3Y389	DUF4704 domain-containing protein.	Uncharacterized protein.	0.736
C3Y388_BRAFL	C3Y391_BRAFL	C3Y388	C3Y391	DUF4704 domain-containing protein.	Uncharacterized protein.	0.920
C3Y389_BRAFL	C3Y388_BRAFL	C3Y389	C3Y388	Uncharacterized protein.	DUF4704 domain-containing protein.	0.736
C3Y389_BRAFL	C3Y391_BRAFL	C3Y389	C3Y391	Uncharacterized protein.	Uncharacterized protein.	0.434
C3Y391_BRAFL	C3Y388_BRAFL	C3Y391	C3Y388	Uncharacterized protein.	DUF4704 domain-containing protein.	0.920
C3Y391_BRAFL	C3Y389_BRAFL	C3Y391	C3Y389	Uncharacterized protein.	Uncharacterized protein.	0.434
C3YU00_BRAFL	C3YZM3_BRAFL	C3YU00	C3YZM3	Uncharacterized protein.	MamL-1 domain-containing protein.	0.747
C3YU00_BRAFL	C3Z994_BRAFL	C3YU00	C3Z994	Uncharacterized protein.	Uncharacterized protein.	0.619
C3YZM3_BRAFL	C3YU00_BRAFL	C3YZM3	C3YU00	MamL-1 domain-containing protein.	Uncharacterized protein.	0.747
C3YZR5_BRAFL	C3Y2C9_BRAFL	C3YZR5	C3Y2C9	Uncharacterized protein.	Uncharacterized protein.	0.900
C3YZR5_BRAFL	C3Z994_BRAFL	C3YZR5	C3Z994	Uncharacterized protein.	Uncharacterized protein.	0.521
C3Z994_BRAFL	C3Y2C9_BRAFL	C3Z994	C3Y2C9	Uncharacterized protein.	Uncharacterized protein.	0.521
C3Z994_BRAFL	C3YU00_BRAFL	C3Z994	C3YU00	Uncharacterized protein.	Uncharacterized protein.	0.619
C3Z994_BRAFL	C3YZR5_BRAFL	C3Z994	C3YZR5	Uncharacterized protein.	Uncharacterized protein.	0.521