(36 nodes) Metabolism of nitric oxide: NOS3 activation and regulation network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XPB4_BRAFL	Uncharacterized protein. (284 aa)
	C3XPD4_BRAFL	Uncharacterized protein. (278 aa)
	C3XPE4_BRAFL	Uncharacterized protein. (259 aa)
	C3XQW7_BRAFL	Uncharacterized protein. (249 aa)
	C3XQX1_BRAFL	Uncharacterized protein. (269 aa)
	C3XW06_BRAFL	Uncharacterized protein. (167 aa)
	C3XYQ4_BRAFL	Dimethylarginine dimethylaminohydrolase protein. (272 aa)
	DDAH1	Uncharacterized protein. (272 aa)
	C3Y0Q9_BRAFL	Uncharacterized protein. (264 aa)
	C3Y3M8_BRAFL	Uncharacterized protein. (269 aa)
	C3Y502_BRAFL	GLOBIN domain-containing protein; Belongs to the globin family. (165 aa)
	C3Y525_BRAFL	GLOBIN domain-containing protein; Belongs to the globin family. (219 aa)
	C3Y5M1_BRAFL	zf-NOSIP domain-containing protein. (272 aa)
	C3Y8G4_BRAFL	Uncharacterized protein. (152 aa)
	C3YEF1_BRAFL	Uncharacterized protein. (230 aa)
	C3YGE1_BRAFL	Uncharacterized protein. (1281 aa)
	C3YH07_BRAFL	FH2 domain-containing protein. (393 aa)
	C3YSB7_BRAFL	GLOBIN domain-containing protein; Belongs to the globin family. (178 aa)
	C3YSB9_BRAFL	GLOBIN domain-containing protein; Belongs to the globin family. (185 aa)
	C3YTM0_BRAFL	Uncharacterized protein. (298 aa)
	C3YTM2_BRAFL	Uncharacterized protein. (270 aa)
	C3YTM3_BRAFL	Uncharacterized protein. (277 aa)
	C3YU79_BRAFL	Helicase C-terminal domain-containing protein. (70 aa)
	C3YY29_BRAFL	Helicase ATP-binding domain-containing protein. (351 aa)
	C3Z3R2_BRAFL	Uncharacterized protein. (273 aa)
	C3Z851_BRAFL	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (135 aa)
	C3Z9Z6_BRAFL	Uncharacterized protein. (271 aa)
	C3ZB83_BRAFL	Uncharacterized protein. (283 aa)
	C3ZB84_BRAFL	Uncharacterized protein. (283 aa)
	C3ZB87_BRAFL	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (138 aa)
	C3ZB88_BRAFL	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (138 aa)
	C3ZR25_BRAFL	Uncharacterized protein. (272 aa)
	C3ZXB5_BRAFL	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (849 aa)
	C3ZXU0_BRAFL	Uncharacterized protein. (384 aa)
	C3ZYT1_BRAFL	Uncharacterized protein. (477 aa)
	C4A095_BRAFL	Uncharacterized protein. (459 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPE4_BRAFL	C3XQX1_BRAFL	C3XPE4	C3XQX1	Uncharacterized protein.	Uncharacterized protein.	0.904
C3XPE4_BRAFL	C3Y0Q9_BRAFL	C3XPE4	C3Y0Q9	Uncharacterized protein.	Uncharacterized protein.	0.904
C3XPE4_BRAFL	C3Y3M8_BRAFL	C3XPE4	C3Y3M8	Uncharacterized protein.	Uncharacterized protein.	0.905
C3XPE4_BRAFL	C3Z9Z6_BRAFL	C3XPE4	C3Z9Z6	Uncharacterized protein.	Uncharacterized protein.	0.904
C3XQX1_BRAFL	C3XPE4_BRAFL	C3XQX1	C3XPE4	Uncharacterized protein.	Uncharacterized protein.	0.904
C3XQX1_BRAFL	C3Y0Q9_BRAFL	C3XQX1	C3Y0Q9	Uncharacterized protein.	Uncharacterized protein.	0.901
C3XQX1_BRAFL	C3Y3M8_BRAFL	C3XQX1	C3Y3M8	Uncharacterized protein.	Uncharacterized protein.	0.905
C3XQX1_BRAFL	C3Z9Z6_BRAFL	C3XQX1	C3Z9Z6	Uncharacterized protein.	Uncharacterized protein.	0.901
C3Y0Q9_BRAFL	C3XPE4_BRAFL	C3Y0Q9	C3XPE4	Uncharacterized protein.	Uncharacterized protein.	0.904
C3Y0Q9_BRAFL	C3XQX1_BRAFL	C3Y0Q9	C3XQX1	Uncharacterized protein.	Uncharacterized protein.	0.901
C3Y0Q9_BRAFL	C3Y3M8_BRAFL	C3Y0Q9	C3Y3M8	Uncharacterized protein.	Uncharacterized protein.	0.906
C3Y0Q9_BRAFL	C3Z9Z6_BRAFL	C3Y0Q9	C3Z9Z6	Uncharacterized protein.	Uncharacterized protein.	0.901
C3Y3M8_BRAFL	C3XPE4_BRAFL	C3Y3M8	C3XPE4	Uncharacterized protein.	Uncharacterized protein.	0.905
C3Y3M8_BRAFL	C3XQX1_BRAFL	C3Y3M8	C3XQX1	Uncharacterized protein.	Uncharacterized protein.	0.905
C3Y3M8_BRAFL	C3Y0Q9_BRAFL	C3Y3M8	C3Y0Q9	Uncharacterized protein.	Uncharacterized protein.	0.906
C3Y3M8_BRAFL	C3Z9Z6_BRAFL	C3Y3M8	C3Z9Z6	Uncharacterized protein.	Uncharacterized protein.	0.905
C3YU79_BRAFL	C3YY29_BRAFL	C3YU79	C3YY29	Helicase C-terminal domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.538
C3YU79_BRAFL	C3ZXB5_BRAFL	C3YU79	C3ZXB5	Helicase C-terminal domain-containing protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.536
C3YU79_BRAFL	C3ZYT1_BRAFL	C3YU79	C3ZYT1	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.538
C3YY29_BRAFL	C3YU79_BRAFL	C3YY29	C3YU79	Helicase ATP-binding domain-containing protein.	Helicase C-terminal domain-containing protein.	0.538