(21 nodes) HDACs deacetylate histones network (Branchiostoma floridae)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XQZ9_BRAFL	Uncharacterized protein. (490 aa)
	C3XSF0_BRAFL	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins. (151 aa)
	C3XYZ7_BRAFL	Uncharacterized protein. (257 aa)
	C3XZ79_BRAFL	WD_REPEATS_REGION domain-containing protein. (402 aa)
	C3Y091_BRAFL	Uncharacterized protein. (706 aa)
	C3Y0R9_BRAFL	RBB1NT domain-containing protein. (696 aa)
	C3Y1G6_BRAFL	P66_CC domain-containing protein. (484 aa)
	C3Y3X8_BRAFL	HMG box domain-containing protein. (410 aa)
	C3Y5N9_BRAFL	Uncharacterized protein. (2907 aa)
	C3YDM5_BRAFL	HMG box domain-containing protein. (375 aa)
	C3YID2_BRAFL	WD_REPEATS_REGION domain-containing protein. (187 aa)
	C3YRK8_BRAFL	Uncharacterized protein. (964 aa)
	C3YRK9_BRAFL	CHDCT2 domain-containing protein. (254 aa)
	C3YZU5_BRAFL	Uncharacterized protein. (174 aa)
	C3Z4C1_BRAFL	Uncharacterized protein. (284 aa)
	C3ZA55_BRAFL	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (462 aa)
	C3ZK38_BRAFL	PHD-type domain-containing protein. (154 aa)
	C3ZLH8_BRAFL	Probable lysine-specific histone demethylase 1; Probable histone demethylase that specifically demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3. (804 aa)
	C3ZM32_BRAFL	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (401 aa)
	C3ZQA5_BRAFL	Uncharacterized protein. (735 aa)
	C4A021_BRAFL	WD_REPEATS_REGION domain-containing protein. (429 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQZ9_BRAFL	C3XSF0_BRAFL	C3XQZ9	C3XSF0	Uncharacterized protein.	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	0.625
C3XQZ9_BRAFL	C3XYZ7_BRAFL	C3XQZ9	C3XYZ7	Uncharacterized protein.	Uncharacterized protein.	0.484
C3XQZ9_BRAFL	C3Y091_BRAFL	C3XQZ9	C3Y091	Uncharacterized protein.	Uncharacterized protein.	0.569
C3XQZ9_BRAFL	C3Y0R9_BRAFL	C3XQZ9	C3Y0R9	Uncharacterized protein.	RBB1NT domain-containing protein.	0.401
C3XQZ9_BRAFL	C3Y1G6_BRAFL	C3XQZ9	C3Y1G6	Uncharacterized protein.	P66_CC domain-containing protein.	0.578
C3XQZ9_BRAFL	C3Y3X8_BRAFL	C3XQZ9	C3Y3X8	Uncharacterized protein.	HMG box domain-containing protein.	0.627
C3XQZ9_BRAFL	C3YDM5_BRAFL	C3XQZ9	C3YDM5	Uncharacterized protein.	HMG box domain-containing protein.	0.627
C3XQZ9_BRAFL	C3YID2_BRAFL	C3XQZ9	C3YID2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.500
C3XQZ9_BRAFL	C3YRK8_BRAFL	C3XQZ9	C3YRK8	Uncharacterized protein.	Uncharacterized protein.	0.698
C3XQZ9_BRAFL	C3YRK9_BRAFL	C3XQZ9	C3YRK9	Uncharacterized protein.	CHDCT2 domain-containing protein.	0.694
C3XQZ9_BRAFL	C3YZU5_BRAFL	C3XQZ9	C3YZU5	Uncharacterized protein.	Uncharacterized protein.	0.612
C3XQZ9_BRAFL	C3Z4C1_BRAFL	C3XQZ9	C3Z4C1	Uncharacterized protein.	Uncharacterized protein.	0.601
C3XQZ9_BRAFL	C3ZA55_BRAFL	C3XQZ9	C3ZA55	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.679
C3XQZ9_BRAFL	C3ZK38_BRAFL	C3XQZ9	C3ZK38	Uncharacterized protein.	PHD-type domain-containing protein.	0.808
C3XQZ9_BRAFL	C3ZLH8_BRAFL	C3XQZ9	C3ZLH8	Uncharacterized protein.	Probable lysine-specific histone demethylase 1; Probable histone demethylase that specifically demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3.	0.970
C3XQZ9_BRAFL	C3ZM32_BRAFL	C3XQZ9	C3ZM32	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.679
C3XQZ9_BRAFL	C4A021_BRAFL	C3XQZ9	C4A021	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.500
C3XSF0_BRAFL	C3XQZ9_BRAFL	C3XSF0	C3XQZ9	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	Uncharacterized protein.	0.625
C3XSF0_BRAFL	C3XYZ7_BRAFL	C3XSF0	C3XYZ7	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	Uncharacterized protein.	0.801
C3XSF0_BRAFL	C3Y091_BRAFL	C3XSF0	C3Y091	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	Uncharacterized protein.	0.654