(13 nodes) Signal amplification network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Z098_BRAFL	WD_REPEATS_REGION domain-containing protein. (415 aa)
	C3XY80_BRAFL	Gi alpha subunit. (354 aa)
	C3YFC1_BRAFL	Uncharacterized protein. (249 aa)
	C3ZWS6_BRAFL	C2 domain-containing protein. (673 aa)
	C3ZWS4_BRAFL	PLA2c domain-containing protein. (167 aa)
	C3ZSF0_BRAFL	WD_REPEATS_REGION domain-containing protein. (341 aa)
	C3ZSA7_BRAFL	WD_REPEATS_REGION domain-containing protein. (434 aa)
	C3ZQP7_BRAFL	PXA domain-containing protein. (154 aa)
	C3ZE91_BRAFL	Uncharacterized protein. (232 aa)
	C3ZE89_BRAFL	Uncharacterized protein. (916 aa)
	C3YQ92_BRAFL	WD_REPEATS_REGION domain-containing protein. (247 aa)
	C3YQA4_BRAFL	WD_REPEATS_REGION domain-containing protein. (355 aa)
	C3YWE4_BRAFL	Uncharacterized protein. (307 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XY80_BRAFL	C3YFC1_BRAFL	C3XY80	C3YFC1	Gi alpha subunit.	Uncharacterized protein.	0.545
C3XY80_BRAFL	C3YQ92_BRAFL	C3XY80	C3YQ92	Gi alpha subunit.	WD_REPEATS_REGION domain-containing protein.	0.862
C3XY80_BRAFL	C3YQA4_BRAFL	C3XY80	C3YQA4	Gi alpha subunit.	WD_REPEATS_REGION domain-containing protein.	0.862
C3XY80_BRAFL	C3YWE4_BRAFL	C3XY80	C3YWE4	Gi alpha subunit.	Uncharacterized protein.	0.556
C3XY80_BRAFL	C3ZSA7_BRAFL	C3XY80	C3ZSA7	Gi alpha subunit.	WD_REPEATS_REGION domain-containing protein.	0.862
C3XY80_BRAFL	C3ZSF0_BRAFL	C3XY80	C3ZSF0	Gi alpha subunit.	WD_REPEATS_REGION domain-containing protein.	0.974
C3YFC1_BRAFL	C3XY80_BRAFL	C3YFC1	C3XY80	Uncharacterized protein.	Gi alpha subunit.	0.545
C3YFC1_BRAFL	C3YQ92_BRAFL	C3YFC1	C3YQ92	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.862
C3YFC1_BRAFL	C3YQA4_BRAFL	C3YFC1	C3YQA4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.862
C3YFC1_BRAFL	C3YWE4_BRAFL	C3YFC1	C3YWE4	Uncharacterized protein.	Uncharacterized protein.	0.561
C3YFC1_BRAFL	C3ZSA7_BRAFL	C3YFC1	C3ZSA7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.862
C3YFC1_BRAFL	C3ZSF0_BRAFL	C3YFC1	C3ZSF0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.974
C3YQ92_BRAFL	C3XY80_BRAFL	C3YQ92	C3XY80	WD_REPEATS_REGION domain-containing protein.	Gi alpha subunit.	0.862
C3YQ92_BRAFL	C3YFC1_BRAFL	C3YQ92	C3YFC1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.862
C3YQ92_BRAFL	C3YQA4_BRAFL	C3YQ92	C3YQA4	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.543
C3YQ92_BRAFL	C3YWE4_BRAFL	C3YQ92	C3YWE4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.862
C3YQ92_BRAFL	C3ZSA7_BRAFL	C3YQ92	C3ZSA7	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.610
C3YQ92_BRAFL	C3ZSF0_BRAFL	C3YQ92	C3ZSF0	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.707
C3YQA4_BRAFL	C3XY80_BRAFL	C3YQA4	C3XY80	WD_REPEATS_REGION domain-containing protein.	Gi alpha subunit.	0.862
C3YQA4_BRAFL	C3YFC1_BRAFL	C3YQA4	C3YFC1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.862