(30 nodes) RIPK1-mediated regulated necrosis network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YEC8_BRAFL	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (57 aa)
	C3XQ28_BRAFL	RING-type domain-containing protein. (545 aa)
	C3XTU5_BRAFL	Uncharacterized protein. (2572 aa)
	C3XTV6_BRAFL	Protein kinase domain-containing protein. (379 aa)
	C3XTV7_BRAFL	Protein kinase domain-containing protein. (473 aa)
	C3XTW2_BRAFL	Protein kinase domain-containing protein. (513 aa)
	C3XXM6_BRAFL	TPR_REGION domain-containing protein. (1022 aa)
	C3XZ95_BRAFL	TPR_REGION domain-containing protein. (727 aa)
	C3Y009_BRAFL	TPR_REGION domain-containing protein. (430 aa)
	C3Y134_BRAFL	BRO1 domain-containing protein. (874 aa)
	C3Y2C9_BRAFL	Uncharacterized protein. (609 aa)
	C3Y8G6_BRAFL	Death domain-containing protein. (1064 aa)
	C3Y9I2_BRAFL	Uncharacterized protein. (1831 aa)
	C3YWJ5_BRAFL	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (118 aa)
	C3YWJ6_BRAFL	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (96 aa)
	C3YZ74_BRAFL	TPR_REGION domain-containing protein. (1925 aa)
	C3YZR5_BRAFL	Uncharacterized protein. (600 aa)
	C3Z4P8_BRAFL	Uncharacterized protein. (195 aa)
	C3Z5N3_BRAFL	RING-type domain-containing protein. (358 aa)
	C3Z5V2_BRAFL	RING-type domain-containing protein. (395 aa)
	C3Z5V3_BRAFL	RING-type domain-containing protein. (376 aa)
	C3Z5V4_BRAFL	RING-type domain-containing protein. (371 aa)
	C3Z9S3_BRAFL	RING-type domain-containing protein. (370 aa)
	C3ZDH2_BRAFL	RING-type domain-containing protein. (426 aa)
	C3ZDH3_BRAFL	RING-type domain-containing protein. (861 aa)
	C3ZE05_BRAFL	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (113 aa)
	C3ZJQ8_BRAFL	RING-type domain-containing protein. (267 aa)
	C3ZQ20_BRAFL	Uncharacterized protein. (62 aa)
	C3ZXZ8_BRAFL	Death domain-containing protein. (298 aa)
	C3ZZM6_BRAFL	Uncharacterized protein. (197 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQ28_BRAFL	C3Y2C9_BRAFL	C3XQ28	C3Y2C9	RING-type domain-containing protein.	Uncharacterized protein.	0.461
C3XQ28_BRAFL	C3YZR5_BRAFL	C3XQ28	C3YZR5	RING-type domain-containing protein.	Uncharacterized protein.	0.461
C3XQ28_BRAFL	C3Z5V2_BRAFL	C3XQ28	C3Z5V2	RING-type domain-containing protein.	RING-type domain-containing protein.	0.900
C3XTU5_BRAFL	C3Y8G6_BRAFL	C3XTU5	C3Y8G6	Uncharacterized protein.	Death domain-containing protein.	0.647
C3XTV7_BRAFL	C3Y8G6_BRAFL	C3XTV7	C3Y8G6	Protein kinase domain-containing protein.	Death domain-containing protein.	0.647
C3Y134_BRAFL	C3Y2C9_BRAFL	C3Y134	C3Y2C9	BRO1 domain-containing protein.	Uncharacterized protein.	0.573
C3Y134_BRAFL	C3YZR5_BRAFL	C3Y134	C3YZR5	BRO1 domain-containing protein.	Uncharacterized protein.	0.573
C3Y2C9_BRAFL	C3XQ28_BRAFL	C3Y2C9	C3XQ28	Uncharacterized protein.	RING-type domain-containing protein.	0.461
C3Y2C9_BRAFL	C3Y134_BRAFL	C3Y2C9	C3Y134	Uncharacterized protein.	BRO1 domain-containing protein.	0.573
C3Y2C9_BRAFL	C3Y8G6_BRAFL	C3Y2C9	C3Y8G6	Uncharacterized protein.	Death domain-containing protein.	0.597
C3Y2C9_BRAFL	C3Y9I2_BRAFL	C3Y2C9	C3Y9I2	Uncharacterized protein.	Uncharacterized protein.	0.637
C3Y2C9_BRAFL	C3YZR5_BRAFL	C3Y2C9	C3YZR5	Uncharacterized protein.	Uncharacterized protein.	0.900
C3Y2C9_BRAFL	C3Z5N3_BRAFL	C3Y2C9	C3Z5N3	Uncharacterized protein.	RING-type domain-containing protein.	0.468
C3Y2C9_BRAFL	C3Z5V2_BRAFL	C3Y2C9	C3Z5V2	Uncharacterized protein.	RING-type domain-containing protein.	0.468
C3Y2C9_BRAFL	C3Z5V3_BRAFL	C3Y2C9	C3Z5V3	Uncharacterized protein.	RING-type domain-containing protein.	0.468
C3Y2C9_BRAFL	C3Z5V4_BRAFL	C3Y2C9	C3Z5V4	Uncharacterized protein.	RING-type domain-containing protein.	0.468
C3Y2C9_BRAFL	C3Z9S3_BRAFL	C3Y2C9	C3Z9S3	Uncharacterized protein.	RING-type domain-containing protein.	0.468
C3Y2C9_BRAFL	C3ZDH2_BRAFL	C3Y2C9	C3ZDH2	Uncharacterized protein.	RING-type domain-containing protein.	0.466
C3Y2C9_BRAFL	C3ZDH3_BRAFL	C3Y2C9	C3ZDH3	Uncharacterized protein.	RING-type domain-containing protein.	0.466
C3Y2C9_BRAFL	C3ZJQ8_BRAFL	C3Y2C9	C3ZJQ8	Uncharacterized protein.	RING-type domain-containing protein.	0.468