(13 nodes) Miscellaneous transport and binding events network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y8K9_BRAFL	Uncharacterized protein. (157 aa)
	C3YLY5_BRAFL	Uncharacterized protein; Belongs to the pannexin family. (467 aa)
	C3YSJ4_BRAFL	Uncharacterized protein. (432 aa)
	C3Z587_BRAFL	Uncharacterized protein. (188 aa)
	C3Z599_BRAFL	Uncharacterized protein. (576 aa)
	C3Z5A0_BRAFL	Uncharacterized protein. (1434 aa)
	C3Y498_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (404 aa)
	C3Y497_BRAFL	Aldolase_II domain-containing protein. (920 aa)
	C3Y3F7_BRAFL	Uncharacterized protein. (320 aa)
	C3XWL0_BRAFL	Uncharacterized protein. (344 aa)
	C3XU68_BRAFL	Aldolase_II domain-containing protein. (251 aa)
	C3XU67_BRAFL	Aldolase_II domain-containing protein. (237 aa)
	C3XPN2_BRAFL	Uncharacterized protein. (267 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPN2_BRAFL	C3YSJ4_BRAFL	C3XPN2	C3YSJ4	Uncharacterized protein.	Uncharacterized protein.	0.705
C3XU67_BRAFL	C3Y498_BRAFL	C3XU67	C3Y498	Aldolase_II domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.463
C3XU68_BRAFL	C3Y497_BRAFL	C3XU68	C3Y497	Aldolase_II domain-containing protein.	Aldolase_II domain-containing protein.	0.445
C3XWL0_BRAFL	C3Y3F7_BRAFL	C3XWL0	C3Y3F7	Uncharacterized protein.	Uncharacterized protein.	0.530
C3XWL0_BRAFL	C3Z587_BRAFL	C3XWL0	C3Z587	Uncharacterized protein.	Uncharacterized protein.	0.451
C3Y3F7_BRAFL	C3XWL0_BRAFL	C3Y3F7	C3XWL0	Uncharacterized protein.	Uncharacterized protein.	0.530
C3Y3F7_BRAFL	C3Z587_BRAFL	C3Y3F7	C3Z587	Uncharacterized protein.	Uncharacterized protein.	0.528
C3Y497_BRAFL	C3XU68_BRAFL	C3Y497	C3XU68	Aldolase_II domain-containing protein.	Aldolase_II domain-containing protein.	0.445
C3Y498_BRAFL	C3XU67_BRAFL	C3Y498	C3XU67	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Aldolase_II domain-containing protein.	0.463
C3Y8K9_BRAFL	C3YSJ4_BRAFL	C3Y8K9	C3YSJ4	Uncharacterized protein.	Uncharacterized protein.	0.487
C3YSJ4_BRAFL	C3XPN2_BRAFL	C3YSJ4	C3XPN2	Uncharacterized protein.	Uncharacterized protein.	0.705
C3YSJ4_BRAFL	C3Y8K9_BRAFL	C3YSJ4	C3Y8K9	Uncharacterized protein.	Uncharacterized protein.	0.487
C3Z587_BRAFL	C3XWL0_BRAFL	C3Z587	C3XWL0	Uncharacterized protein.	Uncharacterized protein.	0.451
C3Z587_BRAFL	C3Y3F7_BRAFL	C3Z587	C3Y3F7	Uncharacterized protein.	Uncharacterized protein.	0.528