(52 nodes) DNA Damage Bypass network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YBA1_BRAFL	Uncharacterized protein. (751 aa)
	C3Y9V2_BRAFL	CBFD_NFYB_HMF domain-containing protein. (115 aa)
	C3Y9F3_BRAFL	Uncharacterized protein. (449 aa)
	C3Y9A3_BRAFL	ATPase_AAA_core domain-containing protein. (2025 aa)
	C3Y6K1_BRAFL	Uncharacterized protein. (1191 aa)
	C3Y5K6_BRAFL	DNA polymerase. (1286 aa)
	C3Y4Y4_BRAFL	Uncharacterized protein. (223 aa)
	C3Y4Y3_BRAFL	BRCT domain-containing protein. (756 aa)
	C3Y2C9_BRAFL	Uncharacterized protein. (609 aa)
	C3Y202_BRAFL	PAF domain-containing protein. (105 aa)
	C3Y1H5_BRAFL	Uncharacterized protein. (515 aa)
	C3Y089_BRAFL	WD_REPEATS_REGION domain-containing protein. (626 aa)
	C3XXN0_BRAFL	RING-type domain-containing protein. (111 aa)
	C3XZD0_BRAFL	Uncharacterized protein. (427 aa)
	C3XXK6_BRAFL	AAA domain-containing protein. (356 aa)
	C3XWH4_BRAFL	Uncharacterized protein. (859 aa)
	C3XVA8_BRAFL	Uncharacterized protein. (115 aa)
	C3ZXE4_BRAFL	UmuC domain-containing protein. (488 aa)
	C3ZWY4_BRAFL	CBFD_NFYB_HMF domain-containing protein. (153 aa)
	C3ZVR8_BRAFL	HORMA domain-containing protein. (224 aa)
	C3ZVP5_BRAFL	Uncharacterized protein. (355 aa)
	C3ZRF2_BRAFL	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (262 aa)
	C3ZN04_BRAFL	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (541 aa)
	C3ZMJ6_BRAFL	CPSF_A domain-containing protein. (1152 aa)
	C3ZL26_BRAFL	AAA domain-containing protein. (329 aa)
	C3ZKT1_BRAFL	Uncharacterized protein. (753 aa)
	C3ZHV9_BRAFL	Uncharacterized protein. (256 aa)
	C3ZHV8_BRAFL	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (265 aa)
	C3ZFB5_BRAFL	BTB domain-containing protein. (538 aa)
	C3ZF52_BRAFL	CULLIN_2 domain-containing protein; Belongs to the cullin family. (822 aa)
	C3ZD95_BRAFL	Uncharacterized protein. (499 aa)
	C3ZB08_BRAFL	Uncharacterized protein. (519 aa)
	C3ZAZ7_BRAFL	ATPase_AAA_core domain-containing protein. (303 aa)
	C3Z899_BRAFL	AAA domain-containing protein. (364 aa)
	C3Z7T5_BRAFL	Ubiquitin carboxyl-terminal hydrolase. (922 aa)
	C3Z6T3_BRAFL	USP domain-containing protein. (892 aa)
	C3Z3Y7_BRAFL	Uncharacterized protein. (241 aa)
	C3Z3L2_BRAFL	UmuC domain-containing protein. (354 aa)
	C3Z126_BRAFL	Ubiquitin carboxyl-terminal hydrolase. (402 aa)
	C3YZR5_BRAFL	Uncharacterized protein. (600 aa)
	C3YVM0_BRAFL	SAP domain-containing protein. (299 aa)
	C3YUN6_BRAFL	Uncharacterized protein. (118 aa)
	C3YTH4_BRAFL	Uncharacterized protein; Belongs to the AAA ATPase family. (718 aa)
	C3YR59_BRAFL	UmuC domain-containing protein. (397 aa)
	C3YLR5_BRAFL	Uncharacterized protein. (451 aa)
	C3YKN6_BRAFL	WD_REPEATS_REGION domain-containing protein. (665 aa)
	C3YI97_BRAFL	DNA_pol_B_exo1 domain-containing protein. (222 aa)
	C3YI96_BRAFL	DNA polymerase. (813 aa)
	C3YEL7_BRAFL	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (540 aa)
	C3YEL6_BRAFL	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (579 aa)
	C3YDK8_BRAFL	AAA domain-containing protein. (362 aa)
	C3YBI7_BRAFL	UmuC domain-containing protein. (493 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XVA8_BRAFL	C3Y5K6_BRAFL	C3XVA8	C3Y5K6	Uncharacterized protein.	DNA polymerase.	0.881
C3XVA8_BRAFL	C3Y9F3_BRAFL	C3XVA8	C3Y9F3	Uncharacterized protein.	Uncharacterized protein.	0.923
C3XVA8_BRAFL	C3Y9V2_BRAFL	C3XVA8	C3Y9V2	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.653
C3XVA8_BRAFL	C3YBI7_BRAFL	C3XVA8	C3YBI7	Uncharacterized protein.	UmuC domain-containing protein.	0.444
C3XVA8_BRAFL	C3YEL6_BRAFL	C3XVA8	C3YEL6	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.733
C3XVA8_BRAFL	C3YEL7_BRAFL	C3XVA8	C3YEL7	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.733
C3XVA8_BRAFL	C3YI96_BRAFL	C3XVA8	C3YI96	Uncharacterized protein.	DNA polymerase.	0.722
C3XVA8_BRAFL	C3YI97_BRAFL	C3XVA8	C3YI97	Uncharacterized protein.	DNA_pol_B_exo1 domain-containing protein.	0.722
C3XVA8_BRAFL	C3YUN6_BRAFL	C3XVA8	C3YUN6	Uncharacterized protein.	Uncharacterized protein.	0.709
C3XVA8_BRAFL	C3Z3L2_BRAFL	C3XVA8	C3Z3L2	Uncharacterized protein.	UmuC domain-containing protein.	0.552
C3XVA8_BRAFL	C3ZD95_BRAFL	C3XVA8	C3ZD95	Uncharacterized protein.	Uncharacterized protein.	0.740
C3XVA8_BRAFL	C3ZN04_BRAFL	C3XVA8	C3ZN04	Uncharacterized protein.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.631
C3XVA8_BRAFL	C3ZRF2_BRAFL	C3XVA8	C3ZRF2	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.418
C3XVA8_BRAFL	C3ZVR8_BRAFL	C3XVA8	C3ZVR8	Uncharacterized protein.	HORMA domain-containing protein.	0.540
C3XVA8_BRAFL	C3ZWY4_BRAFL	C3XVA8	C3ZWY4	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.659
C3XWH4_BRAFL	C3XXK6_BRAFL	C3XWH4	C3XXK6	Uncharacterized protein.	AAA domain-containing protein.	0.501
C3XWH4_BRAFL	C3XXN0_BRAFL	C3XWH4	C3XXN0	Uncharacterized protein.	RING-type domain-containing protein.	0.531
C3XWH4_BRAFL	C3XZD0_BRAFL	C3XWH4	C3XZD0	Uncharacterized protein.	Uncharacterized protein.	0.690
C3XWH4_BRAFL	C3Y2C9_BRAFL	C3XWH4	C3Y2C9	Uncharacterized protein.	Uncharacterized protein.	0.673
C3XWH4_BRAFL	C3Y4Y3_BRAFL	C3XWH4	C3Y4Y3	Uncharacterized protein.	BRCT domain-containing protein.	0.434