(98 nodes) Cargo recognition for clathrin-mediated endocytosis network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XPI1_BRAFL	DUF1681 domain-containing protein. (257 aa)
	C3XPL2_BRAFL	SH3 domain-containing protein. (119 aa)
	C3XQ82_BRAFL	V-SNARE coiled-coil homology domain-containing protein. (125 aa)
	C3XRW4_BRAFL	Uncharacterized protein. (496 aa)
	C3XS55_BRAFL	Uncharacterized protein. (673 aa)
	C3XSX7_BRAFL	Uncharacterized protein. (308 aa)
	C3XU16_BRAFL	Vitellogenin domain-containing protein. (1571 aa)
	C3XU48_BRAFL	Uncharacterized protein. (290 aa)
	C3XU80_BRAFL	Uncharacterized protein. (363 aa)
	C3XXX7_BRAFL	PID domain-containing protein. (128 aa)
	C3XYA1_BRAFL	PCI domain-containing protein. (249 aa)
	C3XZW7_BRAFL	Protein kinase domain-containing protein. (1464 aa)
	C3Y0I1_BRAFL	Uncharacterized protein. (1805 aa)
	C3Y1N3_BRAFL	Uncharacterized protein. (283 aa)
	C3Y1X0_BRAFL	Uncharacterized protein. (359 aa)
	C3Y293_BRAFL	MPN domain-containing protein. (168 aa)
	C3Y2C9_BRAFL	Uncharacterized protein. (609 aa)
	C3Y307_BRAFL	Uncharacterized protein. (429 aa)
	Avp	Vasopressin-neurophysin protein. (167 aa)
	C3Y4I4_BRAFL	Uncharacterized protein. (333 aa)
	C3Y684_BRAFL	Uncharacterized protein. (645 aa)
	C3Y8E0_BRAFL	Uncharacterized protein. (267 aa)
	C3YHH5_BRAFL	SH3 domain-containing protein. (52 aa)
	C3YIJ5_BRAFL	MHD domain-containing protein. (672 aa)
	C3YIJ6_BRAFL	FCH domain-containing protein. (457 aa)
	C3YIY6_BRAFL	PCI domain-containing protein. (405 aa)
	C3YKX3_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (206 aa)
	C3YM55_BRAFL	Uncharacterized protein. (622 aa)
	C3YNP1_BRAFL	Uncharacterized protein. (500 aa)
	C3YNP2_BRAFL	PCI domain-containing protein. (106 aa)
	C3YNP3_BRAFL	Uncharacterized protein. (899 aa)
	C3YNQ9_BRAFL	Uncharacterized protein. (121 aa)
	C3YNV3_BRAFL	Uncharacterized protein. (497 aa)
	C3YPW2_BRAFL	Uncharacterized protein. (578 aa)
	C3YPZ4_BRAFL	C2 domain-containing protein. (262 aa)
	C3YQ29_BRAFL	Uncharacterized protein. (444 aa)
	C3YRU5_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (220 aa)
	C3YTZ4_BRAFL	Uncharacterized protein. (541 aa)
	C3YU25_BRAFL	Uncharacterized protein. (568 aa)
	C3YVH5_BRAFL	Uncharacterized protein. (1824 aa)
	C3YWE6_BRAFL	PCI domain-containing protein. (429 aa)
	C3YWW9_BRAFL	SH3 domain-containing protein. (59 aa)
	C3YWX3_BRAFL	ENTH domain-containing protein. (500 aa)
	C3YXI1_BRAFL	Uncharacterized protein. (507 aa)
	C3YXU9_BRAFL	ENTH domain-containing protein. (623 aa)
	C3YYA1_BRAFL	Arf-GAP domain-containing protein. (282 aa)
	C3YZC2_BRAFL	ATPase_AAA_core domain-containing protein. (178 aa)
	C3YZR5_BRAFL	Uncharacterized protein. (600 aa)
	C3YZV8_BRAFL	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (248 aa)
	C3Z052_BRAFL	Uncharacterized protein. (1806 aa)
	C3Z0B0_BRAFL	PCI domain-containing protein. (188 aa)
	C3Z1G4_BRAFL	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (950 aa)
	C3Z2S3_BRAFL	EGF-like domain-containing protein. (288 aa)
	C3Z3J8_BRAFL	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	C3Z3W7_BRAFL	TSNAXIP1_N domain-containing protein. (582 aa)
	C3Z4L5_BRAFL	MFS domain-containing protein. (461 aa)
	C3Z4L8_BRAFL	C2 domain-containing protein. (444 aa)
	C3Z559_BRAFL	Uncharacterized protein. (550 aa)
	C3Z560_BRAFL	Uncharacterized protein. (467 aa)
	C3Z6H6_BRAFL	Uncharacterized protein. (334 aa)
	C3Z6W8_BRAFL	Uncharacterized protein. (248 aa)
	C3Z7Y3_BRAFL	Torsin. (348 aa)
	C3Z8B3_BRAFL	MPN domain-containing protein. (298 aa)
	C3Z977_BRAFL	C2 domain-containing protein. (143 aa)
	C3Z9A8_BRAFL	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1533 aa)
	C3ZBX6_BRAFL	Uncharacterized protein. (668 aa)
	C3ZDI0_BRAFL	Uncharacterized protein. (147 aa)
	C3ZF86_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (102 aa)
	C3ZGC1_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (400 aa)
	C3ZGK5_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (360 aa)
	C3ZJ15_BRAFL	Uncharacterized protein. (3569 aa)
	C3ZJ90_BRAFL	Vitellogenin domain-containing protein. (800 aa)
	C3ZJ91_BRAFL	Vitellogenin domain-containing protein. (1042 aa)
	C3ZJ93_BRAFL	Uncharacterized protein. (956 aa)
	C3ZJ94_BRAFL	Uncharacterized protein. (200 aa)
	C3ZJV0_BRAFL	PCI domain-containing protein. (486 aa)
	C3ZLK0_BRAFL	Uncharacterized protein. (1250 aa)
	C3ZLK1_BRAFL	Uncharacterized protein. (160 aa)
	C3ZLV4_BRAFL	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (351 aa)
	C3ZMD5_BRAFL	Uncharacterized protein. (2276 aa)
	C3ZNR9_BRAFL	Uncharacterized protein. (359 aa)
	C3ZNS2_BRAFL	Uncharacterized protein. (665 aa)
	C3ZP65_BRAFL	V-SNARE coiled-coil homology domain-containing protein. (114 aa)
	C3ZQG0_BRAFL	Uncharacterized protein. (775 aa)
	C3ZRF6_BRAFL	Ubiquitin-like domain-containing protein. (77 aa)
	C3ZRH0_BRAFL	Uncharacterized protein. (465 aa)
	C3ZS84_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (350 aa)
	C3ZS86_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (346 aa)
	C3ZSU7_BRAFL	Uncharacterized protein. (596 aa)
	C3ZUK4_BRAFL	Uncharacterized protein. (183 aa)
	C3ZV09_BRAFL	Uncharacterized protein. (151 aa)
	C3ZV86_BRAFL	Uncharacterized protein. (206 aa)
	C3ZW37_BRAFL	Uncharacterized protein. (373 aa)
	C3ZW38_BRAFL	Uncharacterized protein. (225 aa)
	C3ZWP4_BRAFL	Uncharacterized protein. (137 aa)
	C3ZYH2_BRAFL	Uncharacterized protein. (113 aa)
	C4A020_BRAFL	Uncharacterized protein. (808 aa)
	C4A0R8_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (615 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avp	C3XQ82_BRAFL	C3Y3Y0	C3XQ82	Vasopressin-neurophysin protein.	V-SNARE coiled-coil homology domain-containing protein.	0.533
Avp	C3XXX7_BRAFL	C3Y3Y0	C3XXX7	Vasopressin-neurophysin protein.	PID domain-containing protein.	0.538
Avp	C3ZGC1_BRAFL	C3Y3Y0	C3ZGC1	Vasopressin-neurophysin protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.475
C3XPI1_BRAFL	C3XQ82_BRAFL	C3XPI1	C3XQ82	DUF1681 domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.707
C3XPI1_BRAFL	C3XXX7_BRAFL	C3XPI1	C3XXX7	DUF1681 domain-containing protein.	PID domain-containing protein.	0.606
C3XPI1_BRAFL	C3XZW7_BRAFL	C3XPI1	C3XZW7	DUF1681 domain-containing protein.	Protein kinase domain-containing protein.	0.598
C3XPI1_BRAFL	C3Y0I1_BRAFL	C3XPI1	C3Y0I1	DUF1681 domain-containing protein.	Uncharacterized protein.	0.660
C3XPI1_BRAFL	C3Y4I4_BRAFL	C3XPI1	C3Y4I4	DUF1681 domain-containing protein.	Uncharacterized protein.	0.552
C3XPI1_BRAFL	C3Y684_BRAFL	C3XPI1	C3Y684	DUF1681 domain-containing protein.	Uncharacterized protein.	0.910
C3XPI1_BRAFL	C3YIJ5_BRAFL	C3XPI1	C3YIJ5	DUF1681 domain-containing protein.	MHD domain-containing protein.	0.756
C3XPI1_BRAFL	C3YIJ6_BRAFL	C3XPI1	C3YIJ6	DUF1681 domain-containing protein.	FCH domain-containing protein.	0.756
C3XPI1_BRAFL	C3YTZ4_BRAFL	C3XPI1	C3YTZ4	DUF1681 domain-containing protein.	Uncharacterized protein.	0.552
C3XPI1_BRAFL	C3YWX3_BRAFL	C3XPI1	C3YWX3	DUF1681 domain-containing protein.	ENTH domain-containing protein.	0.848
C3XPI1_BRAFL	C3YXU9_BRAFL	C3XPI1	C3YXU9	DUF1681 domain-containing protein.	ENTH domain-containing protein.	0.696
C3XPI1_BRAFL	C3YYA1_BRAFL	C3XPI1	C3YYA1	DUF1681 domain-containing protein.	Arf-GAP domain-containing protein.	0.573
C3XPI1_BRAFL	C3YZV8_BRAFL	C3XPI1	C3YZV8	DUF1681 domain-containing protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.881
C3XPI1_BRAFL	C3Z1G4_BRAFL	C3XPI1	C3Z1G4	DUF1681 domain-containing protein.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.931
C3XPI1_BRAFL	C3Z3J8_BRAFL	C3XPI1	C3Z3J8	DUF1681 domain-containing protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.904
C3XPI1_BRAFL	C3Z3W7_BRAFL	C3XPI1	C3Z3W7	DUF1681 domain-containing protein.	TSNAXIP1_N domain-containing protein.	0.699
C3XPI1_BRAFL	C3Z4L5_BRAFL	C3XPI1	C3Z4L5	DUF1681 domain-containing protein.	MFS domain-containing protein.	0.568