(44 nodes) Plasma lipoprotein remodeling network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XQ46_BRAFL	Fibrinogen C-terminal domain-containing protein. (215 aa)
	C3XU16_BRAFL	Vitellogenin domain-containing protein. (1571 aa)
	C3XYM5_BRAFL	P/Homo B domain-containing protein. (1503 aa)
	C3XZV2_BRAFL	Uncharacterized protein. (502 aa)
	C3Y045_BRAFL	Uncharacterized protein. (223 aa)
	C3Y3G8_BRAFL	Uncharacterized protein. (1177 aa)
	C3Y5I0_BRAFL	Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family. (513 aa)
	C3Y7I1_BRAFL	Kringle domain-containing protein. (186 aa)
	C3Y7R4_BRAFL	Kringle domain-containing protein. (98 aa)
	C3YCF8_BRAFL	Protein disulfide-isomerase. (504 aa)
	C3YH34_BRAFL	Uncharacterized protein. (563 aa)
	C3YLE3_BRAFL	Lipase domain-containing protein. (72 aa)
	C3YLE6_BRAFL	Uncharacterized protein. (502 aa)
	C3YLE8_BRAFL	Lipase domain-containing protein. (83 aa)
	C3YLI6_BRAFL	P/Homo B domain-containing protein. (523 aa)
	C3YMH1_BRAFL	Uncharacterized protein. (269 aa)
	C3YP17_BRAFL	Uncharacterized protein. (586 aa)
	C3YQ19_BRAFL	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (1541 aa)
	C3YRB0_BRAFL	Uncharacterized protein. (699 aa)
	C3YVH5_BRAFL	Uncharacterized protein. (1824 aa)
	C3Z052_BRAFL	Uncharacterized protein. (1806 aa)
	C3Z4C9_BRAFL	Kringle domain-containing protein. (77 aa)
	C3Z5A2_BRAFL	Vitellogenin domain-containing protein. (871 aa)
	C3Z5A6_BRAFL	Uncharacterized protein; Belongs to the peptidase S1 family. (429 aa)
	C3Z6N3_BRAFL	Protein disulfide-isomerase. (486 aa)
	C3Z738_BRAFL	Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family. (541 aa)
	C3ZFK8_BRAFL	Uncharacterized protein. (106 aa)
	C3ZFM6_BRAFL	Kringle domain-containing protein. (80 aa)
	C3ZI10_BRAFL	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (1512 aa)
	C3ZIG9_BRAFL	Fibrinogen C-terminal domain-containing protein. (239 aa)
	C3ZIN0_BRAFL	Lipase domain-containing protein. (78 aa)
	C3ZJ15_BRAFL	Uncharacterized protein. (3569 aa)
	C3ZJ90_BRAFL	Vitellogenin domain-containing protein. (800 aa)
	C3ZJ91_BRAFL	Vitellogenin domain-containing protein. (1042 aa)
	C3ZJ93_BRAFL	Uncharacterized protein. (956 aa)
	C3ZJ94_BRAFL	Uncharacterized protein. (200 aa)
	C3ZK05_BRAFL	Fibrinogen C-terminal domain-containing protein. (183 aa)
	C3ZK09_BRAFL	P/Homo B domain-containing protein. (528 aa)
	C3ZK12_BRAFL	Fibrinogen C-terminal domain-containing protein. (209 aa)
	C3ZK71_BRAFL	Uncharacterized protein. (360 aa)
	C3ZNM6_BRAFL	Kringle domain-containing protein. (92 aa)
	C3ZR04_BRAFL	Uncharacterized protein. (454 aa)
	C3ZVM2_BRAFL	Fibrinogen C-terminal domain-containing protein. (279 aa)
	C3ZVM3_BRAFL	Fibrinogen C-terminal domain-containing protein. (269 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XU16_BRAFL	C3Z5A2_BRAFL	C3XU16	C3Z5A2	Vitellogenin domain-containing protein.	Vitellogenin domain-containing protein.	0.803
C3XZV2_BRAFL	C3ZJ94_BRAFL	C3XZV2	C3ZJ94	Uncharacterized protein.	Uncharacterized protein.	0.566
C3Y045_BRAFL	C3ZJ94_BRAFL	C3Y045	C3ZJ94	Uncharacterized protein.	Uncharacterized protein.	0.566
C3Y3G8_BRAFL	C3ZJ94_BRAFL	C3Y3G8	C3ZJ94	Uncharacterized protein.	Uncharacterized protein.	0.566
C3Y5I0_BRAFL	C3Z738_BRAFL	C3Y5I0	C3Z738	Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family.	Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family.	0.535
C3Y7I1_BRAFL	C3ZJ94_BRAFL	C3Y7I1	C3ZJ94	Kringle domain-containing protein.	Uncharacterized protein.	0.566
C3Y7R4_BRAFL	C3ZJ94_BRAFL	C3Y7R4	C3ZJ94	Kringle domain-containing protein.	Uncharacterized protein.	0.566
C3YCF8_BRAFL	C3Z5A2_BRAFL	C3YCF8	C3Z5A2	Protein disulfide-isomerase.	Vitellogenin domain-containing protein.	0.804
C3YCF8_BRAFL	C3ZJ15_BRAFL	C3YCF8	C3ZJ15	Protein disulfide-isomerase.	Uncharacterized protein.	0.405
C3YCF8_BRAFL	C3ZJ93_BRAFL	C3YCF8	C3ZJ93	Protein disulfide-isomerase.	Uncharacterized protein.	0.405
C3YCF8_BRAFL	C3ZJ94_BRAFL	C3YCF8	C3ZJ94	Protein disulfide-isomerase.	Uncharacterized protein.	0.670
C3YH34_BRAFL	C3ZJ94_BRAFL	C3YH34	C3ZJ94	Uncharacterized protein.	Uncharacterized protein.	0.566
C3YLE6_BRAFL	C3YLE8_BRAFL	C3YLE6	C3YLE8	Uncharacterized protein.	Lipase domain-containing protein.	0.650
C3YLE8_BRAFL	C3YLE6_BRAFL	C3YLE8	C3YLE6	Lipase domain-containing protein.	Uncharacterized protein.	0.650
C3YMH1_BRAFL	C3ZJ94_BRAFL	C3YMH1	C3ZJ94	Uncharacterized protein.	Uncharacterized protein.	0.566
C3YP17_BRAFL	C3ZJ94_BRAFL	C3YP17	C3ZJ94	Uncharacterized protein.	Uncharacterized protein.	0.566
C3YVH5_BRAFL	C3Z5A2_BRAFL	C3YVH5	C3Z5A2	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.731
C3Z052_BRAFL	C3Z5A2_BRAFL	C3Z052	C3Z5A2	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.731
C3Z4C9_BRAFL	C3ZJ94_BRAFL	C3Z4C9	C3ZJ94	Kringle domain-containing protein.	Uncharacterized protein.	0.566
C3Z5A2_BRAFL	C3XU16_BRAFL	C3Z5A2	C3XU16	Vitellogenin domain-containing protein.	Vitellogenin domain-containing protein.	0.803