(41 nodes) Plasma lipoprotein clearance network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YVH5_BRAFL	Uncharacterized protein. (1824 aa)
	C3YW30_BRAFL	Uncharacterized protein; Belongs to the peptidase S8 family. (682 aa)
	C3XU73_BRAFL	Uncharacterized protein. (461 aa)
	C3XYL2_BRAFL	Uncharacterized protein. (1106 aa)
	C3XZG2_BRAFL	ML domain-containing protein. (149 aa)
	C3XU16_BRAFL	Vitellogenin domain-containing protein. (1571 aa)
	C3XSR5_BRAFL	Uncharacterized protein. (3038 aa)
	C3ZZ31_BRAFL	Nuclear receptor domain-containing protein. (70 aa)
	C3ZPQ2_BRAFL	Uncharacterized protein. (343 aa)
	C3ZPL9_BRAFL	Uncharacterized protein. (1997 aa)
	C3ZN03_BRAFL	Uncharacterized protein. (538 aa)
	C3ZLV4_BRAFL	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (351 aa)
	C3ZJJ6_BRAFL	Uncharacterized protein. (463 aa)
	C3ZJ94_BRAFL	Uncharacterized protein. (200 aa)
	C3ZJ93_BRAFL	Uncharacterized protein. (956 aa)
	C3ZJ91_BRAFL	Vitellogenin domain-containing protein. (1042 aa)
	C3ZJ90_BRAFL	Vitellogenin domain-containing protein. (800 aa)
	C3ZJ15_BRAFL	Uncharacterized protein. (3569 aa)
	C3ZGU6_BRAFL	CUB domain-containing protein. (100 aa)
	C3ZG84_BRAFL	Uncharacterized protein. (405 aa)
	C3ZCS6_BRAFL	CUB domain-containing protein. (76 aa)
	C3ZCS5_BRAFL	CUB domain-containing protein. (66 aa)
	C3ZCE1_BRAFL	C-type lectin domain-containing protein; Belongs to the peptidase S8 family. (839 aa)
	C3Z5B5_BRAFL	Uncharacterized protein. (482 aa)
	C3Z3W7_BRAFL	TSNAXIP1_N domain-containing protein. (582 aa)
	C3Z3J8_BRAFL	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	C3Z224_BRAFL	Uncharacterized protein. (232 aa)
	C3Z1N8_BRAFL	COesterase domain-containing protein. (621 aa)
	C3Z1J9_BRAFL	Uncharacterized protein. (559 aa)
	C3Z1G4_BRAFL	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (950 aa)
	C3Z052_BRAFL	Uncharacterized protein. (1806 aa)
	C3YZR5_BRAFL	Uncharacterized protein. (600 aa)
	C3YYH0_BRAFL	Uncharacterized protein. (1103 aa)
	C3YYG8_BRAFL	Uncharacterized protein. (583 aa)
	C3YW31_BRAFL	Uncharacterized protein; Belongs to the peptidase S8 family. (697 aa)
	C3Y0B0_BRAFL	ML domain-containing protein. (150 aa)
	C3Y0B1_BRAFL	ML domain-containing protein. (138 aa)
	C3Y2C9_BRAFL	Uncharacterized protein. (609 aa)
	C3YIU8_BRAFL	Uncharacterized protein. (848 aa)
	C3YJ62_BRAFL	Uncharacterized protein. (405 aa)
	C3YTQ5_BRAFL	Uncharacterized protein. (1204 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XSR5_BRAFL	C3Z1J9_BRAFL	C3XSR5	C3Z1J9	Uncharacterized protein.	Uncharacterized protein.	0.570
C3XSR5_BRAFL	C3ZN03_BRAFL	C3XSR5	C3ZN03	Uncharacterized protein.	Uncharacterized protein.	0.570
C3XU73_BRAFL	C3Y2C9_BRAFL	C3XU73	C3Y2C9	Uncharacterized protein.	Uncharacterized protein.	0.615
C3XU73_BRAFL	C3YZR5_BRAFL	C3XU73	C3YZR5	Uncharacterized protein.	Uncharacterized protein.	0.615
C3XZG2_BRAFL	C3Y0B0_BRAFL	C3XZG2	C3Y0B0	ML domain-containing protein.	ML domain-containing protein.	0.903
C3XZG2_BRAFL	C3ZJ94_BRAFL	C3XZG2	C3ZJ94	ML domain-containing protein.	Uncharacterized protein.	0.481
C3Y0B0_BRAFL	C3XZG2_BRAFL	C3Y0B0	C3XZG2	ML domain-containing protein.	ML domain-containing protein.	0.903
C3Y0B0_BRAFL	C3ZJ94_BRAFL	C3Y0B0	C3ZJ94	ML domain-containing protein.	Uncharacterized protein.	0.481
C3Y0B1_BRAFL	C3ZJ94_BRAFL	C3Y0B1	C3ZJ94	ML domain-containing protein.	Uncharacterized protein.	0.481
C3Y2C9_BRAFL	C3XU73_BRAFL	C3Y2C9	C3XU73	Uncharacterized protein.	Uncharacterized protein.	0.615
C3Y2C9_BRAFL	C3YZR5_BRAFL	C3Y2C9	C3YZR5	Uncharacterized protein.	Uncharacterized protein.	0.900
C3Y2C9_BRAFL	C3Z1G4_BRAFL	C3Y2C9	C3Z1G4	Uncharacterized protein.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.455
C3Y2C9_BRAFL	C3Z3J8_BRAFL	C3Y2C9	C3Z3J8	Uncharacterized protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.601
C3Y2C9_BRAFL	C3ZJ94_BRAFL	C3Y2C9	C3ZJ94	Uncharacterized protein.	Uncharacterized protein.	0.483
C3Y2C9_BRAFL	C3ZLV4_BRAFL	C3Y2C9	C3ZLV4	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.611
C3YTQ5_BRAFL	C3Z1J9_BRAFL	C3YTQ5	C3Z1J9	Uncharacterized protein.	Uncharacterized protein.	0.570
C3YTQ5_BRAFL	C3ZN03_BRAFL	C3YTQ5	C3ZN03	Uncharacterized protein.	Uncharacterized protein.	0.570
C3YW30_BRAFL	C3Z3J8_BRAFL	C3YW30	C3Z3J8	Uncharacterized protein; Belongs to the peptidase S8 family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.426
C3YW31_BRAFL	C3Z3J8_BRAFL	C3YW31	C3Z3J8	Uncharacterized protein; Belongs to the peptidase S8 family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.426
C3YYG8_BRAFL	C3Z1J9_BRAFL	C3YYG8	C3Z1J9	Uncharacterized protein.	Uncharacterized protein.	0.570