(18 nodes) ER Quality Control Compartment (ERQC) network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YJ41_BRAFL	RING-type domain-containing protein. (737 aa)
	C3XTS8_BRAFL	Uncharacterized protein. (708 aa)
	C3Y2C9_BRAFL	Uncharacterized protein. (609 aa)
	C3Y6H5_BRAFL	RING-type domain-containing protein. (449 aa)
	C3YA24_BRAFL	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (778 aa)
	C3YD04_BRAFL	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (800 aa)
	C3YG77_BRAFL	Uncharacterized protein. (832 aa)
	C3YP84_BRAFL	Uncharacterized protein. (469 aa)
	C3YPS9_BRAFL	RING-CH-type domain-containing protein. (474 aa)
	C3YUA7_BRAFL	RING-CH-type domain-containing protein. (622 aa)
	C3YV77_BRAFL	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (570 aa)
	C3YVA2_BRAFL	RING-CH-type domain-containing protein. (219 aa)
	C3YZR5_BRAFL	Uncharacterized protein. (600 aa)
	C3Z538_BRAFL	RING-CH-type domain-containing protein. (555 aa)
	C3ZE29_BRAFL	Uncharacterized protein. (1647 aa)
	C3ZGY3_BRAFL	RING-CH-type domain-containing protein. (294 aa)
	C3ZSY4_BRAFL	RING-CH-type domain-containing protein. (741 aa)
	C3ZXL6_BRAFL	RING-CH-type domain-containing protein. (155 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y2C9_BRAFL	C3Y6H5_BRAFL	C3Y2C9	C3Y6H5	Uncharacterized protein.	RING-type domain-containing protein.	0.416
C3Y2C9_BRAFL	C3YZR5_BRAFL	C3Y2C9	C3YZR5	Uncharacterized protein.	Uncharacterized protein.	0.900
C3Y6H5_BRAFL	C3Y2C9_BRAFL	C3Y6H5	C3Y2C9	RING-type domain-containing protein.	Uncharacterized protein.	0.416
C3Y6H5_BRAFL	C3YZR5_BRAFL	C3Y6H5	C3YZR5	RING-type domain-containing protein.	Uncharacterized protein.	0.416
C3YA24_BRAFL	C3ZE29_BRAFL	C3YA24	C3ZE29	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	Uncharacterized protein.	0.456
C3YD04_BRAFL	C3ZE29_BRAFL	C3YD04	C3ZE29	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	Uncharacterized protein.	0.556
C3YUA7_BRAFL	C3ZGY3_BRAFL	C3YUA7	C3ZGY3	RING-CH-type domain-containing protein.	RING-CH-type domain-containing protein.	0.538
C3YV77_BRAFL	C3ZE29_BRAFL	C3YV77	C3ZE29	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	Uncharacterized protein.	0.525
C3YZR5_BRAFL	C3Y2C9_BRAFL	C3YZR5	C3Y2C9	Uncharacterized protein.	Uncharacterized protein.	0.900
C3YZR5_BRAFL	C3Y6H5_BRAFL	C3YZR5	C3Y6H5	Uncharacterized protein.	RING-type domain-containing protein.	0.416
C3ZE29_BRAFL	C3YA24_BRAFL	C3ZE29	C3YA24	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.456
C3ZE29_BRAFL	C3YD04_BRAFL	C3ZE29	C3YD04	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.556
C3ZE29_BRAFL	C3YV77_BRAFL	C3ZE29	C3YV77	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.525
C3ZGY3_BRAFL	C3YUA7_BRAFL	C3ZGY3	C3YUA7	RING-CH-type domain-containing protein.	RING-CH-type domain-containing protein.	0.538