(37 nodes) RAC2 GTPase cycle network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XQQ3_BRAFL	MSC domain-containing protein. (153 aa)
	C3XYW8_BRAFL	Rho-GAP domain-containing protein. (60 aa)
	C3Y0J2_BRAFL	PDZ domain-containing protein. (304 aa)
	C3Y2F0_BRAFL	Uncharacterized protein. (745 aa)
	C3Y4C7_BRAFL	Uncharacterized protein. (1023 aa)
	C3YA44_BRAFL	Uncharacterized protein. (1022 aa)
	C3YBL9_BRAFL	Uncharacterized protein. (834 aa)
	C3YCT4_BRAFL	Uncharacterized protein. (1589 aa)
	C3YDQ9_BRAFL	L-type lectin-like domain-containing protein. (519 aa)
	C3YFI0_BRAFL	Uncharacterized protein. (180 aa)
	C3YM03_BRAFL	PDZ domain-containing protein. (657 aa)
	C3YRF6_BRAFL	Uncharacterized protein. (243 aa)
	C3YWN9_BRAFL	Uncharacterized protein. (346 aa)
	C3YYX6_BRAFL	ANK_REP_REGION domain-containing protein. (490 aa)
	C3YZ78_BRAFL	Uncharacterized protein. (926 aa)
	C3YZ87_BRAFL	Uncharacterized protein. (234 aa)
	C3Z0H2_BRAFL	Uncharacterized protein; Belongs to the MAGUK family. (575 aa)
	C3Z2X0_BRAFL	Uncharacterized protein; Belongs to the DOCK family. (1343 aa)
	C3Z6E2_BRAFL	Uncharacterized protein. (1162 aa)
	C3Z6J7_BRAFL	Rho-GAP domain-containing protein. (127 aa)
	C3Z6J8_BRAFL	Uncharacterized protein. (59 aa)
	C3Z7A3_BRAFL	Uncharacterized protein. (834 aa)
	C3Z851_BRAFL	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (135 aa)
	C3Z904_BRAFL	Uncharacterized protein. (205 aa)
	C3Z9A4_BRAFL	PH domain-containing protein. (261 aa)
	C3Z9N4_BRAFL	Uncharacterized protein. (426 aa)
	C3ZB87_BRAFL	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (138 aa)
	C3ZB88_BRAFL	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (138 aa)
	C3ZBB8_BRAFL	Arm_2 domain-containing protein. (252 aa)
	C3ZBY1_BRAFL	Uncharacterized protein. (983 aa)
	C3ZIB9_BRAFL	Uncharacterized protein. (191 aa)
	C3ZJJ1_BRAFL	Uncharacterized protein. (322 aa)
	C3ZK47_BRAFL	POTRA domain-containing protein. (385 aa)
	C3ZKW7_BRAFL	RING-type domain-containing protein. (371 aa)
	C3ZLE6_BRAFL	Uncharacterized protein. (1136 aa)
	C3ZWI3_BRAFL	Uncharacterized protein. (1034 aa)
	C3ZZC4_BRAFL	RING-type domain-containing protein. (288 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y0J2_BRAFL	C3Y2F0_BRAFL	C3Y0J2	C3Y2F0	PDZ domain-containing protein.	Uncharacterized protein.	0.428
C3Y2F0_BRAFL	C3Y0J2_BRAFL	C3Y2F0	C3Y0J2	Uncharacterized protein.	PDZ domain-containing protein.	0.428
C3Y2F0_BRAFL	C3YA44_BRAFL	C3Y2F0	C3YA44	Uncharacterized protein.	Uncharacterized protein.	0.627
C3Y2F0_BRAFL	C3YYX6_BRAFL	C3Y2F0	C3YYX6	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.446
C3Y2F0_BRAFL	C3Z0H2_BRAFL	C3Y2F0	C3Z0H2	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.501
C3Y2F0_BRAFL	C3Z904_BRAFL	C3Y2F0	C3Z904	Uncharacterized protein.	Uncharacterized protein.	0.435
C3Y2F0_BRAFL	C3Z9N4_BRAFL	C3Y2F0	C3Z9N4	Uncharacterized protein.	Uncharacterized protein.	0.528
C3Y2F0_BRAFL	C3ZIB9_BRAFL	C3Y2F0	C3ZIB9	Uncharacterized protein.	Uncharacterized protein.	0.633
C3Y4C7_BRAFL	C3ZIB9_BRAFL	C3Y4C7	C3ZIB9	Uncharacterized protein.	Uncharacterized protein.	0.932
C3YA44_BRAFL	C3Y2F0_BRAFL	C3YA44	C3Y2F0	Uncharacterized protein.	Uncharacterized protein.	0.627
C3YA44_BRAFL	C3Z0H2_BRAFL	C3YA44	C3Z0H2	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.432
C3YA44_BRAFL	C3ZIB9_BRAFL	C3YA44	C3ZIB9	Uncharacterized protein.	Uncharacterized protein.	0.625
C3YCT4_BRAFL	C3YFI0_BRAFL	C3YCT4	C3YFI0	Uncharacterized protein.	Uncharacterized protein.	0.943
C3YCT4_BRAFL	C3YWN9_BRAFL	C3YCT4	C3YWN9	Uncharacterized protein.	Uncharacterized protein.	0.992
C3YCT4_BRAFL	C3ZIB9_BRAFL	C3YCT4	C3ZIB9	Uncharacterized protein.	Uncharacterized protein.	0.461
C3YFI0_BRAFL	C3YCT4_BRAFL	C3YFI0	C3YCT4	Uncharacterized protein.	Uncharacterized protein.	0.943
C3YFI0_BRAFL	C3YWN9_BRAFL	C3YFI0	C3YWN9	Uncharacterized protein.	Uncharacterized protein.	0.929
C3YRF6_BRAFL	C3ZIB9_BRAFL	C3YRF6	C3ZIB9	Uncharacterized protein.	Uncharacterized protein.	0.499
C3YRF6_BRAFL	C3ZLE6_BRAFL	C3YRF6	C3ZLE6	Uncharacterized protein.	Uncharacterized protein.	0.425
C3YWN9_BRAFL	C3YCT4_BRAFL	C3YWN9	C3YCT4	Uncharacterized protein.	Uncharacterized protein.	0.992