(80 nodes) Regulation of NF-kappa B signaling network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YAW2_BRAFL	NACHT domain-containing protein. (1372 aa)
	C4A0L3_BRAFL	Uncharacterized protein. (103 aa)
	Rab23b	Ubiquitin carboxyl-terminal hydrolase. (488 aa)
	C3ZZC1_BRAFL	Uncharacterized protein. (256 aa)
	C3ZXG1_BRAFL	Uncharacterized protein. (122 aa)
	C3ZWX5_BRAFL	Uncharacterized protein. (2508 aa)
	C3ZT74_BRAFL	Uncharacterized protein. (201 aa)
	C3ZRQ1_BRAFL	NACHT domain-containing protein. (1088 aa)
	C3ZRQ0_BRAFL	NACHT domain-containing protein. (732 aa)
	C3ZRP9_BRAFL	NACHT domain-containing protein. (1243 aa)
	C3ZRP8_BRAFL	NACHT domain-containing protein. (894 aa)
	C3ZQF1_BRAFL	NACHT domain-containing protein. (725 aa)
	C3ZPW9_BRAFL	Uncharacterized protein. (1627 aa)
	C3ZPW8_BRAFL	Uncharacterized protein. (1470 aa)
	C3ZPV3_BRAFL	Uncharacterized protein. (1432 aa)
	C3ZPV2_BRAFL	Uncharacterized protein. (142 aa)
	C3ZPV1_BRAFL	Uncharacterized protein. (1288 aa)
	C3ZPV0_BRAFL	Uncharacterized protein. (2945 aa)
	C3ZN65_BRAFL	Uncharacterized protein. (147 aa)
	C3ZN33_BRAFL	Uncharacterized protein. (1248 aa)
	C3ZMW3_BRAFL	Uncharacterized protein. (699 aa)
	C3ZLI1_BRAFL	CARD domain-containing protein. (459 aa)
	C3ZL97_BRAFL	NACHT domain-containing protein. (680 aa)
	C3ZL07_BRAFL	Uncharacterized protein. (1176 aa)
	C3ZKY1_BRAFL	Uncharacterized protein. (1110 aa)
	C3ZKX1_BRAFL	Uncharacterized protein. (2586 aa)
	C3ZH16_BRAFL	Uncharacterized protein. (473 aa)
	C3ZFV4_BRAFL	NACHT domain-containing protein. (1168 aa)
	C3ZC06_BRAFL	Uncharacterized protein. (1543 aa)
	C3ZC04_BRAFL	Uncharacterized protein. (688 aa)
	C3ZBD0_BRAFL	RNase_Zc3h12a domain-containing protein. (166 aa)
	C3ZAE5_BRAFL	Uncharacterized protein. (578 aa)
	C3Z6U5_BRAFL	NACHT domain-containing protein. (1257 aa)
	C3Z6U4_BRAFL	NACHT domain-containing protein. (1340 aa)
	C3Z6D2_BRAFL	Uncharacterized protein. (1308 aa)
	C3Z6D1_BRAFL	Uncharacterized protein. (4203 aa)
	C3Z654_BRAFL	NACHT domain-containing protein. (617 aa)
	C3Z653_BRAFL	Uncharacterized protein. (6675 aa)
	C3Z2D7_BRAFL	Uncharacterized protein. (596 aa)
	C3Z0N9_BRAFL	Uncharacterized protein. (187 aa)
	C3YZR5_BRAFL	Uncharacterized protein. (600 aa)
	C3YX03_BRAFL	Uncharacterized protein. (558 aa)
	C3YX00_BRAFL	Uncharacterized protein. (301 aa)
	C3YVM4_BRAFL	Uncharacterized protein. (525 aa)
	C3YV28_BRAFL	NACHT domain-containing protein. (769 aa)
	C3YRB1_BRAFL	Uncharacterized protein. (543 aa)
	C3YPU4_BRAFL	CCHC NOA-type domain-containing protein. (873 aa)
	C3YNT8_BRAFL	NACHT domain-containing protein. (1137 aa)
	C3YNT6_BRAFL	Uncharacterized protein. (987 aa)
	C3YNT5_BRAFL	Uncharacterized protein. (1732 aa)
	C3YKZ3_BRAFL	CARD domain-containing protein. (604 aa)
	C3YJL7_BRAFL	Uncharacterized protein. (240 aa)
	C3YJL6_BRAFL	Uncharacterized protein. (172 aa)
	C3YJL5_BRAFL	Uncharacterized protein. (169 aa)
	C3YJL4_BRAFL	Uncharacterized protein. (244 aa)
	C3YJJ9_BRAFL	Uncharacterized protein. (903 aa)
	C3YJ83_BRAFL	RING-type domain-containing protein. (180 aa)
	C3YI94_BRAFL	Uncharacterized protein. (101 aa)
	C3YI90_BRAFL	Uncharacterized protein. (862 aa)
	C3YGG0_BRAFL	Uncharacterized protein. (1356 aa)
	C3YFT5_BRAFL	Protein kinase domain-containing protein. (755 aa)
	C3YFC4_BRAFL	Uncharacterized protein. (486 aa)
	C3YFC2_BRAFL	Uncharacterized protein. (555 aa)
	C3YDX3_BRAFL	Uncharacterized protein. (588 aa)
	C3YDN9_BRAFL	Uncharacterized protein. (446 aa)
	C3YCT6_BRAFL	Uncharacterized protein. (650 aa)
	C3YCI6_BRAFL	Uncharacterized protein. (1311 aa)
	C3YCH9_BRAFL	Uncharacterized protein. (1034 aa)
	C3YCH8_BRAFL	Uncharacterized protein. (1029 aa)
	C3Y6Q9_BRAFL	Uncharacterized protein. (479 aa)
	C3Y582_BRAFL	Uncharacterized protein. (898 aa)
	C3Y2S0_BRAFL	Uncharacterized protein. (284 aa)
	C3Y2Q9_BRAFL	NACHT domain-containing protein. (854 aa)
	C3Y2C9_BRAFL	Uncharacterized protein. (609 aa)
	C3Y0T4_BRAFL	Uncharacterized protein. (2174 aa)
	C3XYH5_BRAFL	Uncharacterized protein. (99 aa)
	C3XV90_BRAFL	Uncharacterized protein. (991 aa)
	C3XQZ6_BRAFL	Uncharacterized protein. (514 aa)
	C3XQ80_BRAFL	Uncharacterized protein. (1642 aa)
	C3XPJ0_BRAFL	Uncharacterized protein. (410 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y2C9_BRAFL	C3YFT5_BRAFL	C3Y2C9	C3YFT5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.483
C3Y2C9_BRAFL	C3YGG0_BRAFL	C3Y2C9	C3YGG0	Uncharacterized protein.	Uncharacterized protein.	0.463
C3Y2C9_BRAFL	C3YI94_BRAFL	C3Y2C9	C3YI94	Uncharacterized protein.	Uncharacterized protein.	0.694
C3Y2C9_BRAFL	C3YJ83_BRAFL	C3Y2C9	C3YJ83	Uncharacterized protein.	RING-type domain-containing protein.	0.694
C3Y2C9_BRAFL	C3YZR5_BRAFL	C3Y2C9	C3YZR5	Uncharacterized protein.	Uncharacterized protein.	0.900
C3Y2C9_BRAFL	C3ZH16_BRAFL	C3Y2C9	C3ZH16	Uncharacterized protein.	Uncharacterized protein.	0.630
C3Y2C9_BRAFL	C3ZN65_BRAFL	C3Y2C9	C3ZN65	Uncharacterized protein.	Uncharacterized protein.	0.694
C3Y2C9_BRAFL	C3ZXG1_BRAFL	C3Y2C9	C3ZXG1	Uncharacterized protein.	Uncharacterized protein.	0.483
C3Y2C9_BRAFL	Rab23b	C3Y2C9	C4A0A6	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.954
C3YFT5_BRAFL	C3Y2C9_BRAFL	C3YFT5	C3Y2C9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.483
C3YFT5_BRAFL	C3YGG0_BRAFL	C3YFT5	C3YGG0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.529
C3YFT5_BRAFL	C3YI94_BRAFL	C3YFT5	C3YI94	Protein kinase domain-containing protein.	Uncharacterized protein.	0.617
C3YFT5_BRAFL	C3YJ83_BRAFL	C3YFT5	C3YJ83	Protein kinase domain-containing protein.	RING-type domain-containing protein.	0.617
C3YFT5_BRAFL	C3YPU4_BRAFL	C3YFT5	C3YPU4	Protein kinase domain-containing protein.	CCHC NOA-type domain-containing protein.	0.860
C3YFT5_BRAFL	C3YZR5_BRAFL	C3YFT5	C3YZR5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.483
C3YFT5_BRAFL	C3Z0N9_BRAFL	C3YFT5	C3Z0N9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.528
C3YFT5_BRAFL	C3ZH16_BRAFL	C3YFT5	C3ZH16	Protein kinase domain-containing protein.	Uncharacterized protein.	0.580
C3YFT5_BRAFL	C3ZN65_BRAFL	C3YFT5	C3ZN65	Protein kinase domain-containing protein.	Uncharacterized protein.	0.617
C3YFT5_BRAFL	C3ZPV2_BRAFL	C3YFT5	C3ZPV2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.528
C3YFT5_BRAFL	C3ZPV3_BRAFL	C3YFT5	C3ZPV3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.528