(11 nodes) Snf7 network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YWT1_BRAFL	Uncharacterized protein. (185 aa)
	C3YIV6_BRAFL	Uncharacterized protein. (222 aa)
	C3YHW5_BRAFL	Uncharacterized protein. (222 aa)
	C3Y5U4_BRAFL	Uncharacterized protein. (1422 aa)
	C3XUB7_BRAFL	Uncharacterized protein. (201 aa)
	C3XTU6_BRAFL	Uncharacterized protein. (211 aa)
	C3XTH3_BRAFL	Uncharacterized protein. (217 aa)
	C3ZCF7_BRAFL	Uncharacterized protein. (199 aa)
	C3ZFF9_BRAFL	Uncharacterized protein. (170 aa)
	C3ZS91_BRAFL	Uncharacterized protein. (159 aa)
	C3Z6I2_BRAFL	Uncharacterized protein. (227 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTH3_BRAFL	C3XTU6_BRAFL	C3XTH3	C3XTU6	Uncharacterized protein.	Uncharacterized protein.	0.987
C3XTH3_BRAFL	C3XUB7_BRAFL	C3XTH3	C3XUB7	Uncharacterized protein.	Uncharacterized protein.	0.819
C3XTH3_BRAFL	C3Y5U4_BRAFL	C3XTH3	C3Y5U4	Uncharacterized protein.	Uncharacterized protein.	0.916
C3XTH3_BRAFL	C3YHW5_BRAFL	C3XTH3	C3YHW5	Uncharacterized protein.	Uncharacterized protein.	0.850
C3XTH3_BRAFL	C3YIV6_BRAFL	C3XTH3	C3YIV6	Uncharacterized protein.	Uncharacterized protein.	0.904
C3XTH3_BRAFL	C3YWT1_BRAFL	C3XTH3	C3YWT1	Uncharacterized protein.	Uncharacterized protein.	0.940
C3XTH3_BRAFL	C3Z6I2_BRAFL	C3XTH3	C3Z6I2	Uncharacterized protein.	Uncharacterized protein.	0.990
C3XTH3_BRAFL	C3ZCF7_BRAFL	C3XTH3	C3ZCF7	Uncharacterized protein.	Uncharacterized protein.	0.819
C3XTH3_BRAFL	C3ZFF9_BRAFL	C3XTH3	C3ZFF9	Uncharacterized protein.	Uncharacterized protein.	0.819
C3XTH3_BRAFL	C3ZS91_BRAFL	C3XTH3	C3ZS91	Uncharacterized protein.	Uncharacterized protein.	0.903
C3XTU6_BRAFL	C3XTH3_BRAFL	C3XTU6	C3XTH3	Uncharacterized protein.	Uncharacterized protein.	0.987
C3XTU6_BRAFL	C3XUB7_BRAFL	C3XTU6	C3XUB7	Uncharacterized protein.	Uncharacterized protein.	0.947
C3XTU6_BRAFL	C3Y5U4_BRAFL	C3XTU6	C3Y5U4	Uncharacterized protein.	Uncharacterized protein.	0.966
C3XTU6_BRAFL	C3YHW5_BRAFL	C3XTU6	C3YHW5	Uncharacterized protein.	Uncharacterized protein.	0.983
C3XTU6_BRAFL	C3YIV6_BRAFL	C3XTU6	C3YIV6	Uncharacterized protein.	Uncharacterized protein.	0.987
C3XTU6_BRAFL	C3YWT1_BRAFL	C3XTU6	C3YWT1	Uncharacterized protein.	Uncharacterized protein.	0.994
C3XTU6_BRAFL	C3Z6I2_BRAFL	C3XTU6	C3Z6I2	Uncharacterized protein.	Uncharacterized protein.	0.995
C3XTU6_BRAFL	C3ZCF7_BRAFL	C3XTU6	C3ZCF7	Uncharacterized protein.	Uncharacterized protein.	0.947
C3XTU6_BRAFL	C3ZFF9_BRAFL	C3XTU6	C3ZFF9	Uncharacterized protein.	Uncharacterized protein.	0.947
C3XTU6_BRAFL	C3ZS91_BRAFL	C3XTU6	C3ZS91	Uncharacterized protein.	Uncharacterized protein.	0.945