(8 nodes) MreB/Mbl protein network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XS36_BRAFL	Uncharacterized protein; Belongs to the heat shock protein 70 family. (638 aa)
	C4A0Y9_BRAFL	Uncharacterized protein. (385 aa)
	C3ZZW9_BRAFL	Uncharacterized protein. (738 aa)
	C3ZTF9_BRAFL	Uncharacterized protein; Belongs to the heat shock protein 70 family. (665 aa)
	C3ZQ99_BRAFL	Uncharacterized protein; Belongs to the heat shock protein 70 family. (773 aa)
	C3ZGI9_BRAFL	Uncharacterized protein. (106 aa)
	C3ZGI8_BRAFL	Uncharacterized protein; Belongs to the heat shock protein 70 family. (692 aa)
	C3YL39_BRAFL	Uncharacterized protein; Belongs to the heat shock protein 70 family. (660 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XS36_BRAFL	C3YL39_BRAFL	C3XS36	C3YL39	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.901
C3XS36_BRAFL	C3ZGI8_BRAFL	C3XS36	C3ZGI8	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.545
C3XS36_BRAFL	C3ZGI9_BRAFL	C3XS36	C3ZGI9	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.542
C3XS36_BRAFL	C3ZTF9_BRAFL	C3XS36	C3ZTF9	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.774
C3XS36_BRAFL	C3ZZW9_BRAFL	C3XS36	C3ZZW9	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.763
C3XS36_BRAFL	C4A0Y9_BRAFL	C3XS36	C4A0Y9	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.749
C3YL39_BRAFL	C3XS36_BRAFL	C3YL39	C3XS36	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.901
C3YL39_BRAFL	C3ZGI8_BRAFL	C3YL39	C3ZGI8	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.545
C3YL39_BRAFL	C3ZGI9_BRAFL	C3YL39	C3ZGI9	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.540
C3YL39_BRAFL	C3ZQ99_BRAFL	C3YL39	C3ZQ99	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.514
C3YL39_BRAFL	C3ZTF9_BRAFL	C3YL39	C3ZTF9	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.777
C3YL39_BRAFL	C3ZZW9_BRAFL	C3YL39	C3ZZW9	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.765
C3YL39_BRAFL	C4A0Y9_BRAFL	C3YL39	C4A0Y9	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.750
C3ZGI8_BRAFL	C3XS36_BRAFL	C3ZGI8	C3XS36	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.545
C3ZGI8_BRAFL	C3YL39_BRAFL	C3ZGI8	C3YL39	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.545
C3ZGI8_BRAFL	C3ZQ99_BRAFL	C3ZGI8	C3ZQ99	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.624
C3ZGI8_BRAFL	C3ZTF9_BRAFL	C3ZGI8	C3ZTF9	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.733
C3ZGI8_BRAFL	C3ZZW9_BRAFL	C3ZGI8	C3ZZW9	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.759
C3ZGI8_BRAFL	C4A0Y9_BRAFL	C3ZGI8	C4A0Y9	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.740
C3ZGI9_BRAFL	C3XS36_BRAFL	C3ZGI9	C3XS36	Uncharacterized protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.542