(43 nodes) Various types of N-glycan biosynthesis network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XPH1_BRAFL	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across t [...] (433 aa)
	C3XR13_BRAFL	Uncharacterized protein. (465 aa)
	C3XRR2_BRAFL	Uncharacterized protein. (186 aa)
	C3XRZ8_BRAFL	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family. (553 aa)
	C3XV39_BRAFL	Glyco_tran_10_N domain-containing protein. (470 aa)
	C3XV40_BRAFL	Glyco_tran_10_N domain-containing protein. (326 aa)
	C3XW98_BRAFL	Uncharacterized protein. (427 aa)
	C3XZG1_BRAFL	Glyco_tran_10_N domain-containing protein. (236 aa)
	C3Y142_BRAFL	Uncharacterized protein. (199 aa)
	C3Y3M2_BRAFL	Uncharacterized protein. (368 aa)
	C3Y764_BRAFL	Uncharacterized protein. (360 aa)
	C3Y8C9_BRAFL	Uncharacterized protein. (644 aa)
	C3YBZ3_BRAFL	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (371 aa)
	C3YCT8_BRAFL	Glyco_tran_10_N domain-containing protein. (1022 aa)
	C3YDQ5_BRAFL	Glyco_tran_10_N domain-containing protein. (288 aa)
	C3YDW8_BRAFL	Uncharacterized protein. (342 aa)
	C3YFB2_BRAFL	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the [...] (116 aa)
	C3YKG2_BRAFL	Glyco_tran_28_C domain-containing protein. (168 aa)
	C3YLH5_BRAFL	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the en [...] (600 aa)
	C3YM34_BRAFL	Uncharacterized protein. (118 aa)
	C3YP94_BRAFL	Glyco_tran_10_N domain-containing protein. (257 aa)
	C3YQJ1_BRAFL	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (480 aa)
	C3YQJ4_BRAFL	Glyco_tran_10_N domain-containing protein. (319 aa)
	C3YT93_BRAFL	Uncharacterized protein. (486 aa)
	C3YVQ2_BRAFL	Glyco_tran_10_N domain-containing protein. (257 aa)
	C3YWQ2_BRAFL	Glyco_tran_10_N domain-containing protein. (292 aa)
	C3YXA0_BRAFL	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (250 aa)
	C3YZR7_BRAFL	Uncharacterized protein. (527 aa)
	C3Z1R2_BRAFL	Uncharacterized protein. (392 aa)
	C3Z1R4_BRAFL	Uncharacterized protein. (236 aa)
	C3Z271_BRAFL	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the en [...] (658 aa)
	C3Z5I4_BRAFL	Uncharacterized protein. (279 aa)
	C3Z7X8_BRAFL	Uncharacterized protein. (283 aa)
	C3Z7X9_BRAFL	Uncharacterized protein. (248 aa)
	C3Z7Y0_BRAFL	Uncharacterized protein. (215 aa)
	C3Z8X5_BRAFL	Glyco_tran_10_N domain-containing protein. (258 aa)
	C3ZAH0_BRAFL	Mannosyltransferase. (483 aa)
	C3ZJH3_BRAFL	Glyco_hydro_38C domain-containing protein. (536 aa)
	C3ZJL9_BRAFL	Glyco_tran_10_N domain-containing protein. (255 aa)
	C3ZQK5_BRAFL	Glyco_tran_10_N domain-containing protein. (245 aa)
	C3ZTD7_BRAFL	Uncharacterized protein. (352 aa)
	C3ZZI0_BRAFL	Glyco_tran_10_N domain-containing protein. (316 aa)
	C4A018_BRAFL	Uncharacterized protein. (254 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPH1_BRAFL	C3XW98_BRAFL	C3XPH1	C3XW98	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across t [...]	Uncharacterized protein.	0.439
C3XPH1_BRAFL	C3Y142_BRAFL	C3XPH1	C3Y142	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across t [...]	Uncharacterized protein.	0.996
C3XPH1_BRAFL	C3Y8C9_BRAFL	C3XPH1	C3Y8C9	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across t [...]	Uncharacterized protein.	0.996
C3XPH1_BRAFL	C3YFB2_BRAFL	C3XPH1	C3YFB2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across t [...]	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the [...]	0.999
C3XPH1_BRAFL	C3YLH5_BRAFL	C3XPH1	C3YLH5	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across t [...]	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the en [...]	0.999
C3XPH1_BRAFL	C3YXA0_BRAFL	C3XPH1	C3YXA0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across t [...]	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.403
C3XPH1_BRAFL	C3Z271_BRAFL	C3XPH1	C3Z271	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across t [...]	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the en [...]	0.999
C3XPH1_BRAFL	C3ZAH0_BRAFL	C3XPH1	C3ZAH0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across t [...]	Mannosyltransferase.	0.626
C3XR13_BRAFL	C3XRZ8_BRAFL	C3XR13	C3XRZ8	Uncharacterized protein.	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	0.442
C3XR13_BRAFL	C3XV39_BRAFL	C3XR13	C3XV39	Uncharacterized protein.	Glyco_tran_10_N domain-containing protein.	0.909
C3XR13_BRAFL	C3XV40_BRAFL	C3XR13	C3XV40	Uncharacterized protein.	Glyco_tran_10_N domain-containing protein.	0.909
C3XR13_BRAFL	C3XZG1_BRAFL	C3XR13	C3XZG1	Uncharacterized protein.	Glyco_tran_10_N domain-containing protein.	0.909
C3XR13_BRAFL	C3YCT8_BRAFL	C3XR13	C3YCT8	Uncharacterized protein.	Glyco_tran_10_N domain-containing protein.	0.909
C3XR13_BRAFL	C3YDQ5_BRAFL	C3XR13	C3YDQ5	Uncharacterized protein.	Glyco_tran_10_N domain-containing protein.	0.909
C3XR13_BRAFL	C3YP94_BRAFL	C3XR13	C3YP94	Uncharacterized protein.	Glyco_tran_10_N domain-containing protein.	0.909
C3XR13_BRAFL	C3YQJ4_BRAFL	C3XR13	C3YQJ4	Uncharacterized protein.	Glyco_tran_10_N domain-containing protein.	0.909
C3XR13_BRAFL	C3YVQ2_BRAFL	C3XR13	C3YVQ2	Uncharacterized protein.	Glyco_tran_10_N domain-containing protein.	0.909
C3XR13_BRAFL	C3YWQ2_BRAFL	C3XR13	C3YWQ2	Uncharacterized protein.	Glyco_tran_10_N domain-containing protein.	0.909
C3XR13_BRAFL	C3Z5I4_BRAFL	C3XR13	C3Z5I4	Uncharacterized protein.	Uncharacterized protein.	0.909
C3XR13_BRAFL	C3Z8X5_BRAFL	C3XR13	C3Z8X5	Uncharacterized protein.	Glyco_tran_10_N domain-containing protein.	0.909