(21 nodes) Mannose type O-glycan biosynthesis network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XRR2_BRAFL	Uncharacterized protein. (186 aa)
	C3XU10_BRAFL	Fibronectin type-III domain-containing protein. (590 aa)
	C3Y239_BRAFL	Uncharacterized protein. (511 aa)
	C3Y3W5_BRAFL	ILEI domain-containing protein. (651 aa)
	C3YA65_BRAFL	Uncharacterized protein. (381 aa)
	C3YBZ3_BRAFL	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (371 aa)
	C3YKG8_BRAFL	Carbohydrate sulfotransferase. (332 aa)
	C3YLW3_BRAFL	Uncharacterized protein. (466 aa)
	C3YQJ1_BRAFL	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (480 aa)
	C3Z2W4_BRAFL	Uncharacterized protein. (454 aa)
	C3Z7H9_BRAFL	Uncharacterized protein. (554 aa)
	C3Z7X8_BRAFL	Uncharacterized protein. (283 aa)
	C3Z7X9_BRAFL	Uncharacterized protein. (248 aa)
	C3Z7Y0_BRAFL	Uncharacterized protein. (215 aa)
	C3ZIR5_BRAFL	Protein kinase domain-containing protein. (244 aa)
	C3ZME4_BRAFL	Uncharacterized protein. (253 aa)
	C3ZQI4_BRAFL	Uncharacterized protein. (588 aa)
	C3ZQK9_BRAFL	Carbohydrate sulfotransferase. (193 aa)
	C3ZTD7_BRAFL	Uncharacterized protein. (352 aa)
	C3ZWL5_BRAFL	Uncharacterized protein. (258 aa)
	C4A018_BRAFL	Uncharacterized protein. (254 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRR2_BRAFL	C3Y3W5_BRAFL	C3XRR2	C3Y3W5	Uncharacterized protein.	ILEI domain-containing protein.	0.910
C3XRR2_BRAFL	C3YBZ3_BRAFL	C3XRR2	C3YBZ3	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.911
C3XRR2_BRAFL	C3YQJ1_BRAFL	C3XRR2	C3YQJ1	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.911
C3XRR2_BRAFL	C3ZWL5_BRAFL	C3XRR2	C3ZWL5	Uncharacterized protein.	Uncharacterized protein.	0.910
C3XU10_BRAFL	C3Y239_BRAFL	C3XU10	C3Y239	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.643
C3XU10_BRAFL	C3Y3W5_BRAFL	C3XU10	C3Y3W5	Fibronectin type-III domain-containing protein.	ILEI domain-containing protein.	0.944
C3XU10_BRAFL	C3YA65_BRAFL	C3XU10	C3YA65	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.622
C3XU10_BRAFL	C3YLW3_BRAFL	C3XU10	C3YLW3	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.646
C3XU10_BRAFL	C3Z2W4_BRAFL	C3XU10	C3Z2W4	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.640
C3XU10_BRAFL	C3Z7H9_BRAFL	C3XU10	C3Z7H9	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.454
C3XU10_BRAFL	C3ZME4_BRAFL	C3XU10	C3ZME4	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.508
C3XU10_BRAFL	C3ZQI4_BRAFL	C3XU10	C3ZQI4	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.933
C3XU10_BRAFL	C3ZWL5_BRAFL	C3XU10	C3ZWL5	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.944
C3Y239_BRAFL	C3XU10_BRAFL	C3Y239	C3XU10	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.643
C3Y239_BRAFL	C3Y3W5_BRAFL	C3Y239	C3Y3W5	Uncharacterized protein.	ILEI domain-containing protein.	0.485
C3Y239_BRAFL	C3YA65_BRAFL	C3Y239	C3YA65	Uncharacterized protein.	Uncharacterized protein.	0.535
C3Y239_BRAFL	C3YLW3_BRAFL	C3Y239	C3YLW3	Uncharacterized protein.	Uncharacterized protein.	0.970
C3Y239_BRAFL	C3Z2W4_BRAFL	C3Y239	C3Z2W4	Uncharacterized protein.	Uncharacterized protein.	0.966
C3Y239_BRAFL	C3ZME4_BRAFL	C3Y239	C3ZME4	Uncharacterized protein.	Uncharacterized protein.	0.538
C3Y239_BRAFL	C3ZQI4_BRAFL	C3Y239	C3ZQI4	Uncharacterized protein.	Uncharacterized protein.	0.411