55 items (Branchiostoma floridae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XPP1_BRAFL	Uncharacterized protein. (398 aa)
	C3XSR9_BRAFL	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family. (581 aa)
	C3XTW3_BRAFL	Uncharacterized protein. (470 aa)
	C3XU31_BRAFL	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (524 aa)
	C3XV59_BRAFL	Uncharacterized protein. (392 aa)
	C3XV60_BRAFL	Uncharacterized protein. (527 aa)
	LIS1_BRAFL	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. (406 aa)
	C3XZS3_BRAFL	Uncharacterized protein. (446 aa)
	C3Y121_BRAFL	Uncharacterized protein. (430 aa)
	C3Y2N4_BRAFL	Uncharacterized protein. (447 aa)
	C3Y337_BRAFL	Uncharacterized protein. (402 aa)
	C3Y425_BRAFL	Uncharacterized protein. (434 aa)
	C3Y426_BRAFL	Uncharacterized protein. (414 aa)
	C3Y427_BRAFL	Uncharacterized protein. (691 aa)
	C3Y4E1_BRAFL	Phospholipase A(2). (158 aa)
	C3Y4E2_BRAFL	Uncharacterized protein. (419 aa)
	C3Y9A4_BRAFL	Cyclic nucleotide-binding domain-containing protein. (1446 aa)
	C3Y9B6_BRAFL	Uncharacterized protein. (589 aa)
	C3YDI1_BRAFL	PA2c domain-containing protein. (111 aa)
	C3YJG9_BRAFL	Uncharacterized protein. (250 aa)
	C3YN11_BRAFL	Uncharacterized protein. (364 aa)
	C3YNA5_BRAFL	Phospholipase A(2). (108 aa)
	C3YNM4_BRAFL	Uncharacterized protein. (261 aa)
	C3YRS2_BRAFL	Uncharacterized protein. (214 aa)
	C3YSR7_BRAFL	acidPPc domain-containing protein. (308 aa)
	C3YVQ4_BRAFL	Uncharacterized protein. (277 aa)
	C3YY13_BRAFL	PA2c domain-containing protein. (118 aa)
	C3YYP6_BRAFL	Uncharacterized protein. (516 aa)
	C3YYQ9_BRAFL	Uncharacterized protein. (260 aa)
	C3YZA7_BRAFL	PA2c domain-containing protein. (228 aa)
	C3Z400_BRAFL	GP-PDE domain-containing protein. (256 aa)
	C3Z4M0_BRAFL	Uncharacterized protein. (78 aa)
	C3Z8F9_BRAFL	Phospholipase A(2). (131 aa)
	C3Z8G0_BRAFL	Phospholipase A(2). (150 aa)
	C3ZBK9_BRAFL	TMEM189_B_dmain domain-containing protein. (268 aa)
	C3ZE08_BRAFL	Uncharacterized protein. (268 aa)
	C3ZG64_BRAFL	Uncharacterized protein. (525 aa)
	C3ZG65_BRAFL	Uncharacterized protein. (368 aa)
	C3ZG66_BRAFL	Uncharacterized protein. (773 aa)
	C3ZI38_BRAFL	Uncharacterized protein. (637 aa)
	C3ZIG4_BRAFL	Uncharacterized protein. (274 aa)
	C3ZND1_BRAFL	Uncharacterized protein. (256 aa)
	C3ZPS6_BRAFL	Uncharacterized protein. (323 aa)
	C3ZPX0_BRAFL	Uncharacterized protein. (242 aa)
	C3ZQZ1_BRAFL	Uncharacterized protein. (384 aa)
	C3ZRY5_BRAFL	Uncharacterized protein. (278 aa)
	C3ZSD5_BRAFL	Uncharacterized protein. (336 aa)
	C3ZSE2_BRAFL	Uncharacterized protein. (347 aa)
	C3ZSP1_BRAFL	Uncharacterized protein. (276 aa)
	C3ZTT0_BRAFL	Uncharacterized protein. (413 aa)
	C3ZVX3_BRAFL	Uncharacterized protein. (211 aa)
	C3ZWM9_BRAFL	acidPPc domain-containing protein. (300 aa)
	C3ZWS4_BRAFL	PLA2c domain-containing protein. (167 aa)
	C3ZXQ1_BRAFL	Uncharacterized protein. (697 aa)
	C3ZZ86_BRAFL	Uncharacterized protein. (206 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPP1_BRAFL	C3XU31_BRAFL	C3XPP1	C3XU31	Uncharacterized protein.	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.650
C3XTW3_BRAFL	C3Y4E1_BRAFL	C3XTW3	C3Y4E1	Uncharacterized protein.	Phospholipase A(2).	0.900
C3XTW3_BRAFL	C3Y4E2_BRAFL	C3XTW3	C3Y4E2	Uncharacterized protein.	Uncharacterized protein.	0.900
C3XTW3_BRAFL	C3Y9A4_BRAFL	C3XTW3	C3Y9A4	Uncharacterized protein.	Cyclic nucleotide-binding domain-containing protein.	0.900
C3XTW3_BRAFL	C3YDI1_BRAFL	C3XTW3	C3YDI1	Uncharacterized protein.	PA2c domain-containing protein.	0.900
C3XTW3_BRAFL	C3YN11_BRAFL	C3XTW3	C3YN11	Uncharacterized protein.	Uncharacterized protein.	0.924
C3XTW3_BRAFL	C3YNA5_BRAFL	C3XTW3	C3YNA5	Uncharacterized protein.	Phospholipase A(2).	0.900
C3XTW3_BRAFL	C3YY13_BRAFL	C3XTW3	C3YY13	Uncharacterized protein.	PA2c domain-containing protein.	0.900
C3XTW3_BRAFL	C3YZA7_BRAFL	C3XTW3	C3YZA7	Uncharacterized protein.	PA2c domain-containing protein.	0.900
C3XTW3_BRAFL	C3Z4M0_BRAFL	C3XTW3	C3Z4M0	Uncharacterized protein.	Uncharacterized protein.	0.901
C3XTW3_BRAFL	C3Z8F9_BRAFL	C3XTW3	C3Z8F9	Uncharacterized protein.	Phospholipase A(2).	0.900
C3XTW3_BRAFL	C3Z8G0_BRAFL	C3XTW3	C3Z8G0	Uncharacterized protein.	Phospholipase A(2).	0.900
C3XTW3_BRAFL	C3ZQZ1_BRAFL	C3XTW3	C3ZQZ1	Uncharacterized protein.	Uncharacterized protein.	0.900
C3XTW3_BRAFL	C3ZWS4_BRAFL	C3XTW3	C3ZWS4	Uncharacterized protein.	PLA2c domain-containing protein.	0.905
C3XTW3_BRAFL	C3ZZ86_BRAFL	C3XTW3	C3ZZ86	Uncharacterized protein.	Uncharacterized protein.	0.924
C3XTW3_BRAFL	LIS1_BRAFL	C3XTW3	C3XVT5	Uncharacterized protein.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.	0.900
C3XU31_BRAFL	C3XPP1_BRAFL	C3XU31	C3XPP1	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family.	Uncharacterized protein.	0.650
C3XU31_BRAFL	C3XV59_BRAFL	C3XU31	C3XV59	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family.	Uncharacterized protein.	0.650
C3XU31_BRAFL	C3XV60_BRAFL	C3XU31	C3XV60	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family.	Uncharacterized protein.	0.650
C3XU31_BRAFL	C3XZS3_BRAFL	C3XU31	C3XZS3	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family.	Uncharacterized protein.	0.650