(30 nodes) Glycosphingolipid biosynthesis - lacto and neolacto series network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XRR2_BRAFL	Uncharacterized protein. (186 aa)
	C3XTY4_BRAFL	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (190 aa)
	C3XYR8_BRAFL	Hexosyltransferase. (267 aa)
	C3Y7X4_BRAFL	Hexosyltransferase. (215 aa)
	C3Y7X5_BRAFL	Hexosyltransferase. (229 aa)
	C3Y7X6_BRAFL	Hexosyltransferase. (279 aa)
	C3Y7X8_BRAFL	Hexosyltransferase. (352 aa)
	C3YA16_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (716 aa)
	C3YBZ3_BRAFL	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (371 aa)
	C3YKZ0_BRAFL	Hexosyltransferase. (259 aa)
	C3YKZ5_BRAFL	Hexosyltransferase. (267 aa)
	C3YLC1_BRAFL	Hexosyltransferase. (328 aa)
	C3YQJ1_BRAFL	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (480 aa)
	C3YQK9_BRAFL	Hexosyltransferase. (415 aa)
	C3YYC5_BRAFL	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (230 aa)
	C3Z047_BRAFL	Uncharacterized protein. (590 aa)
	C3Z3S6_BRAFL	Uncharacterized protein. (307 aa)
	C3Z7X8_BRAFL	Uncharacterized protein. (283 aa)
	C3Z7X9_BRAFL	Uncharacterized protein. (248 aa)
	C3Z7Y0_BRAFL	Uncharacterized protein. (215 aa)
	C3ZDY3_BRAFL	Hexosyltransferase. (339 aa)
	C3ZDY4_BRAFL	Hexosyltransferase. (270 aa)
	C3ZEG5_BRAFL	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (273 aa)
	C3ZFY1_BRAFL	Hexosyltransferase. (323 aa)
	C3ZGX4_BRAFL	Uncharacterized protein. (776 aa)
	C3ZJB8_BRAFL	Hexosyltransferase. (226 aa)
	C3ZKM5_BRAFL	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (435 aa)
	C3ZS52_BRAFL	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (295 aa)
	C3ZTD7_BRAFL	Uncharacterized protein. (352 aa)
	C4A018_BRAFL	Uncharacterized protein. (254 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRR2_BRAFL	C3XYR8_BRAFL	C3XRR2	C3XYR8	Uncharacterized protein.	Hexosyltransferase.	0.681
C3XRR2_BRAFL	C3Y7X4_BRAFL	C3XRR2	C3Y7X4	Uncharacterized protein.	Hexosyltransferase.	0.681
C3XRR2_BRAFL	C3Y7X5_BRAFL	C3XRR2	C3Y7X5	Uncharacterized protein.	Hexosyltransferase.	0.681
C3XRR2_BRAFL	C3Y7X6_BRAFL	C3XRR2	C3Y7X6	Uncharacterized protein.	Hexosyltransferase.	0.681
C3XRR2_BRAFL	C3Y7X8_BRAFL	C3XRR2	C3Y7X8	Uncharacterized protein.	Hexosyltransferase.	0.675
C3XRR2_BRAFL	C3YA16_BRAFL	C3XRR2	C3YA16	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.650
C3XRR2_BRAFL	C3YBZ3_BRAFL	C3XRR2	C3YBZ3	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.911
C3XRR2_BRAFL	C3YKZ0_BRAFL	C3XRR2	C3YKZ0	Uncharacterized protein.	Hexosyltransferase.	0.694
C3XRR2_BRAFL	C3YKZ5_BRAFL	C3XRR2	C3YKZ5	Uncharacterized protein.	Hexosyltransferase.	0.694
C3XRR2_BRAFL	C3YLC1_BRAFL	C3XRR2	C3YLC1	Uncharacterized protein.	Hexosyltransferase.	0.675
C3XRR2_BRAFL	C3YQJ1_BRAFL	C3XRR2	C3YQJ1	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.911
C3XRR2_BRAFL	C3YQK9_BRAFL	C3XRR2	C3YQK9	Uncharacterized protein.	Hexosyltransferase.	0.907
C3XRR2_BRAFL	C3Z047_BRAFL	C3XRR2	C3Z047	Uncharacterized protein.	Uncharacterized protein.	0.681
C3XRR2_BRAFL	C3ZDY3_BRAFL	C3XRR2	C3ZDY3	Uncharacterized protein.	Hexosyltransferase.	0.681
C3XRR2_BRAFL	C3ZDY4_BRAFL	C3XRR2	C3ZDY4	Uncharacterized protein.	Hexosyltransferase.	0.681
C3XRR2_BRAFL	C3ZFY1_BRAFL	C3XRR2	C3ZFY1	Uncharacterized protein.	Hexosyltransferase.	0.681
C3XRR2_BRAFL	C3ZJB8_BRAFL	C3XRR2	C3ZJB8	Uncharacterized protein.	Hexosyltransferase.	0.905
C3XTY4_BRAFL	C3YBZ3_BRAFL	C3XTY4	C3YBZ3	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.472
C3XTY4_BRAFL	C3YQJ1_BRAFL	C3XTY4	C3YQJ1	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.499
C3XTY4_BRAFL	C3YYC5_BRAFL	C3XTY4	C3YYC5	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.673