(21 nodes) Aminoacyl-tRNA biosynthesis network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GATC_BRAFL	Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatC family. (149 aa)
	C3XXL0_BRAFL	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (1179 aa)
	C3XZ88_BRAFL	Uncharacterized protein. (1596 aa)
	C3Y0K0_BRAFL	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (417 aa)
	C3Y284_BRAFL	AA_TRNA_LIGASE_II domain-containing protein. (382 aa)
	C3Y8L9_BRAFL	Lysine--tRNA ligase. (593 aa)
	C3YBZ0_BRAFL	Uncharacterized protein. (682 aa)
	C3YGB0_BRAFL	Uncharacterized protein. (446 aa)
	C3YIC1_BRAFL	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (323 aa)
	C3YJE6_BRAFL	tRNA-synt_1c domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (543 aa)
	C3YJV4_BRAFL	tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (531 aa)
	C3YPI3_BRAFL	AA_TRNA_LIGASE_II domain-containing protein. (512 aa)
	C3YTK3_BRAFL	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (1057 aa)
	C3YTL2_BRAFL	AA_TRNA_LIGASE_II domain-containing protein. (519 aa)
	C3Z4B7_BRAFL	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (579 aa)
	C3Z5W5_BRAFL	AA_TRNA_LIGASE_II domain-containing protein. (498 aa)
	C3Z6A4_BRAFL	AA_TRNA_LIGASE_II domain-containing protein. (681 aa)
	C3ZM79_BRAFL	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (133 aa)
	C3ZVA7_BRAFL	AA_TRNA_LIGASE_II_ALA domain-containing protein. (751 aa)
	C3ZZX4_BRAFL	AA_TRNA_LIGASE_II domain-containing protein. (423 aa)
	C4A0W0_BRAFL	Uncharacterized protein. (515 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XXL0_BRAFL	C3XZ88_BRAFL	C3XXL0	C3XZ88	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein.	0.999
C3XXL0_BRAFL	C3Y0K0_BRAFL	C3XXL0	C3Y0K0	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.789
C3XXL0_BRAFL	C3Y284_BRAFL	C3XXL0	C3Y284	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	AA_TRNA_LIGASE_II domain-containing protein.	0.775
C3XXL0_BRAFL	C3Y8L9_BRAFL	C3XXL0	C3Y8L9	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Lysine--tRNA ligase.	0.972
C3XXL0_BRAFL	C3YBZ0_BRAFL	C3XXL0	C3YBZ0	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein.	0.719
C3XXL0_BRAFL	C3YGB0_BRAFL	C3XXL0	C3YGB0	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein.	0.692
C3XXL0_BRAFL	C3YIC1_BRAFL	C3XXL0	C3YIC1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.635
C3XXL0_BRAFL	C3YJE6_BRAFL	C3XXL0	C3YJE6	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA-synt_1c domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.886
C3XXL0_BRAFL	C3YJV4_BRAFL	C3XXL0	C3YJV4	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.890
C3XXL0_BRAFL	C3YPI3_BRAFL	C3XXL0	C3YPI3	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	AA_TRNA_LIGASE_II domain-containing protein.	0.804
C3XXL0_BRAFL	C3YTK3_BRAFL	C3XXL0	C3YTK3	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.968
C3XXL0_BRAFL	C3YTL2_BRAFL	C3XXL0	C3YTL2	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	AA_TRNA_LIGASE_II domain-containing protein.	0.735
C3XXL0_BRAFL	C3Z4B7_BRAFL	C3XXL0	C3Z4B7	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
C3XXL0_BRAFL	C3Z5W5_BRAFL	C3XXL0	C3Z5W5	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	AA_TRNA_LIGASE_II domain-containing protein.	0.634
C3XXL0_BRAFL	C3Z6A4_BRAFL	C3XXL0	C3Z6A4	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	AA_TRNA_LIGASE_II domain-containing protein.	0.750
C3XXL0_BRAFL	C3ZM79_BRAFL	C3XXL0	C3ZM79	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.992
C3XXL0_BRAFL	C3ZVA7_BRAFL	C3XXL0	C3ZVA7	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	AA_TRNA_LIGASE_II_ALA domain-containing protein.	0.681
C3XXL0_BRAFL	C3ZZX4_BRAFL	C3XXL0	C3ZZX4	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	AA_TRNA_LIGASE_II domain-containing protein.	0.723
C3XXL0_BRAFL	C4A0W0_BRAFL	C3XXL0	C4A0W0	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein.	0.589
C3XZ88_BRAFL	C3XXL0_BRAFL	C3XZ88	C3XXL0	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999