(20 nodes) RNA polymerase network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XPX8_BRAFL	RPOL4c domain-containing protein. (142 aa)
	C3XRA2_BRAFL	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
	C3XZ17_BRAFL	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (317 aa)
	C3Y255_BRAFL	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
	C3Y5M2_BRAFL	Uncharacterized protein. (390 aa)
	C3Y5U9_BRAFL	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1104 aa)
	C3Y645_BRAFL	Uncharacterized protein. (68 aa)
	C3Y929_BRAFL	Uncharacterized protein. (697 aa)
	C3Y9I0_BRAFL	Uncharacterized protein. (203 aa)
	C3YEB7_BRAFL	RNA_pol_Rpb1_1 domain-containing protein. (384 aa)
	C3YH75_BRAFL	Uncharacterized protein. (129 aa)
	C3YRU6_BRAFL	RNA_pol_L_2 domain-containing protein. (110 aa)
	C3YW52_BRAFL	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1140 aa)
	C3YYC3_BRAFL	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1137 aa)
	C3Z918_BRAFL	RPOLD domain-containing protein. (275 aa)
	C3ZBW5_BRAFL	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1731 aa)
	C3ZES3_BRAFL	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1934 aa)
	C3ZQF0_BRAFL	Uncharacterized protein. (210 aa)
	C3ZQZ0_BRAFL	Uncharacterized protein. (172 aa)
	C3ZWG1_BRAFL	HTH_9 domain-containing protein. (204 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPX8_BRAFL	C3XRA2_BRAFL	C3XPX8	C3XRA2	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
C3XPX8_BRAFL	C3XZ17_BRAFL	C3XPX8	C3XZ17	RPOL4c domain-containing protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.538
C3XPX8_BRAFL	C3Y255_BRAFL	C3XPX8	C3Y255	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.859
C3XPX8_BRAFL	C3Y5M2_BRAFL	C3XPX8	C3Y5M2	RPOL4c domain-containing protein.	Uncharacterized protein.	0.717
C3XPX8_BRAFL	C3Y5U9_BRAFL	C3XPX8	C3Y5U9	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
C3XPX8_BRAFL	C3Y645_BRAFL	C3XPX8	C3Y645	RPOL4c domain-containing protein.	Uncharacterized protein.	0.999
C3XPX8_BRAFL	C3Y929_BRAFL	C3XPX8	C3Y929	RPOL4c domain-containing protein.	Uncharacterized protein.	0.520
C3XPX8_BRAFL	C3Y9I0_BRAFL	C3XPX8	C3Y9I0	RPOL4c domain-containing protein.	Uncharacterized protein.	0.706
C3XPX8_BRAFL	C3YH75_BRAFL	C3XPX8	C3YH75	RPOL4c domain-containing protein.	Uncharacterized protein.	0.999
C3XPX8_BRAFL	C3YRU6_BRAFL	C3XPX8	C3YRU6	RPOL4c domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.728
C3XPX8_BRAFL	C3YW52_BRAFL	C3XPX8	C3YW52	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.966
C3XPX8_BRAFL	C3YYC3_BRAFL	C3XPX8	C3YYC3	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.966
C3XPX8_BRAFL	C3Z918_BRAFL	C3XPX8	C3Z918	RPOL4c domain-containing protein.	RPOLD domain-containing protein.	0.999
C3XPX8_BRAFL	C3ZES3_BRAFL	C3XPX8	C3ZES3	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.986
C3XPX8_BRAFL	C3ZQF0_BRAFL	C3XPX8	C3ZQF0	RPOL4c domain-containing protein.	Uncharacterized protein.	0.999
C3XPX8_BRAFL	C3ZQZ0_BRAFL	C3XPX8	C3ZQZ0	RPOL4c domain-containing protein.	Uncharacterized protein.	0.999
C3XPX8_BRAFL	C3ZWG1_BRAFL	C3XPX8	C3ZWG1	RPOL4c domain-containing protein.	HTH_9 domain-containing protein.	0.531
C3XRA2_BRAFL	C3XPX8_BRAFL	C3XRA2	C3XPX8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RPOL4c domain-containing protein.	0.999
C3XRA2_BRAFL	C3XZ17_BRAFL	C3XRA2	C3XZ17	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.860
C3XRA2_BRAFL	C3Y255_BRAFL	C3XRA2	C3Y255	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.726