(15 nodes) SNARE interactions in vesicular transport network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XQ82_BRAFL	V-SNARE coiled-coil homology domain-containing protein. (125 aa)
	C3XVK7_BRAFL	Uncharacterized protein. (114 aa)
	C3XZI6_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (239 aa)
	C3Y4B1_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (198 aa)
	C3Y4G5_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (109 aa)
	C3YC85_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (217 aa)
	C3YCU5_BRAFL	V-SNARE coiled-coil homology domain-containing protein. (1279 aa)
	C3YH01_BRAFL	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (331 aa)
	C3YH60_BRAFL	Uncharacterized protein. (238 aa)
	C3YKX3_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (206 aa)
	C3YU04_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (226 aa)
	C3Z089_BRAFL	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (211 aa)
	C3Z5P8_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (196 aa)
	C3Z9D6_BRAFL	Uncharacterized protein. (185 aa)
	C3ZP65_BRAFL	V-SNARE coiled-coil homology domain-containing protein. (114 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQ82_BRAFL	C3XVK7_BRAFL	C3XQ82	C3XVK7	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.996
C3XQ82_BRAFL	C3XZI6_BRAFL	C3XQ82	C3XZI6	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.942
C3XQ82_BRAFL	C3Y4B1_BRAFL	C3XQ82	C3Y4B1	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.647
C3XQ82_BRAFL	C3Y4G5_BRAFL	C3XQ82	C3Y4G5	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.912
C3XQ82_BRAFL	C3YC85_BRAFL	C3XQ82	C3YC85	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.944
C3XQ82_BRAFL	C3YH01_BRAFL	C3XQ82	C3YH01	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.974
C3XQ82_BRAFL	C3YH60_BRAFL	C3XQ82	C3YH60	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.876
C3XQ82_BRAFL	C3YKX3_BRAFL	C3XQ82	C3YKX3	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.798
C3XQ82_BRAFL	C3YU04_BRAFL	C3XQ82	C3YU04	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.722
C3XQ82_BRAFL	C3Z089_BRAFL	C3XQ82	C3Z089	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.772
C3XQ82_BRAFL	C3Z5P8_BRAFL	C3XQ82	C3Z5P8	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.961
C3XQ82_BRAFL	C3Z9D6_BRAFL	C3XQ82	C3Z9D6	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.941
C3XQ82_BRAFL	C3ZP65_BRAFL	C3XQ82	C3ZP65	V-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.936
C3XVK7_BRAFL	C3XQ82_BRAFL	C3XVK7	C3XQ82	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.996
C3XVK7_BRAFL	C3Y4B1_BRAFL	C3XVK7	C3Y4B1	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.799
C3XVK7_BRAFL	C3Y4G5_BRAFL	C3XVK7	C3Y4G5	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.571
C3XVK7_BRAFL	C3YC85_BRAFL	C3XVK7	C3YC85	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.659
C3XVK7_BRAFL	C3YCU5_BRAFL	C3XVK7	C3YCU5	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.900
C3XVK7_BRAFL	C3YH01_BRAFL	C3XVK7	C3YH01	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.788
C3XVK7_BRAFL	C3YH60_BRAFL	C3XVK7	C3YH60	Uncharacterized protein.	Uncharacterized protein.	0.709