(14 nodes) Autophagy - other network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XQF4_BRAFL	Serine/threonine-protein phosphatase. (313 aa)
	C3XS24_BRAFL	Uncharacterized protein. (2114 aa)
	C3Y1V6_BRAFL	Phosphatidylinositol 3-kinase catalytic subunit type 3. (890 aa)
	C3Y8L2_BRAFL	Uncharacterized protein. (117 aa)
	C3YEM3_BRAFL	Uncharacterized protein. (481 aa)
	C3YWN0_BRAFL	Uncharacterized protein. (358 aa)
	C3Z7M9_BRAFL	WD_REPEATS_REGION domain-containing protein. (285 aa)
	C3ZDY7_BRAFL	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (380 aa)
	C3ZEM6_BRAFL	Autophagy-related protein 3. (1022 aa)
	C3ZF16_BRAFL	Uncharacterized protein. (351 aa)
	C3ZI99_BRAFL	Uncharacterized protein. (117 aa)
	C3ZJI8_BRAFL	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (86 aa)
	C3ZLL7_BRAFL	DUF3385 domain-containing protein. (1400 aa)
	C3ZNT2_BRAFL	Autophagy protein 5; Involved in autophagic vesicle formation. (261 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQF4_BRAFL	C3ZF16_BRAFL	C3XQF4	C3ZF16	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.999
C3XS24_BRAFL	C3Y1V6_BRAFL	C3XS24	C3Y1V6	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.711
C3XS24_BRAFL	C3Y8L2_BRAFL	C3XS24	C3Y8L2	Uncharacterized protein.	Uncharacterized protein.	0.525
C3XS24_BRAFL	C3YEM3_BRAFL	C3XS24	C3YEM3	Uncharacterized protein.	Uncharacterized protein.	0.711
C3XS24_BRAFL	C3YWN0_BRAFL	C3XS24	C3YWN0	Uncharacterized protein.	Uncharacterized protein.	0.996
C3XS24_BRAFL	C3ZDY7_BRAFL	C3XS24	C3ZDY7	Uncharacterized protein.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.720
C3XS24_BRAFL	C3ZEM6_BRAFL	C3XS24	C3ZEM6	Uncharacterized protein.	Autophagy-related protein 3.	0.711
C3XS24_BRAFL	C3ZI99_BRAFL	C3XS24	C3ZI99	Uncharacterized protein.	Uncharacterized protein.	0.525
C3XS24_BRAFL	C3ZJI8_BRAFL	C3XS24	C3ZJI8	Uncharacterized protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.711
C3XS24_BRAFL	C3ZNT2_BRAFL	C3XS24	C3ZNT2	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.716
C3Y1V6_BRAFL	C3XS24_BRAFL	C3Y1V6	C3XS24	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.711
C3Y1V6_BRAFL	C3Y8L2_BRAFL	C3Y1V6	C3Y8L2	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.803
C3Y1V6_BRAFL	C3YEM3_BRAFL	C3Y1V6	C3YEM3	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.999
C3Y1V6_BRAFL	C3YWN0_BRAFL	C3Y1V6	C3YWN0	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.906
C3Y1V6_BRAFL	C3ZDY7_BRAFL	C3Y1V6	C3ZDY7	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.711
C3Y1V6_BRAFL	C3ZEM6_BRAFL	C3Y1V6	C3ZEM6	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Autophagy-related protein 3.	0.908
C3Y1V6_BRAFL	C3ZI99_BRAFL	C3Y1V6	C3ZI99	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.803
C3Y1V6_BRAFL	C3ZJI8_BRAFL	C3Y1V6	C3ZJI8	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.910
C3Y1V6_BRAFL	C3ZNT2_BRAFL	C3Y1V6	C3ZNT2	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.906
C3Y8L2_BRAFL	C3XS24_BRAFL	C3Y8L2	C3XS24	Uncharacterized protein.	Uncharacterized protein.	0.525