(31 nodes) Mitophagy - animal network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XPY9_BRAFL	Protein kinase domain-containing protein. (347 aa)
	C3XQ95_BRAFL	Neuroblastoma RAS viral oncogene-like protein. (189 aa)
	C3XR39_BRAFL	RHD domain-containing protein. (278 aa)
	C3XXF8_BRAFL	Uncharacterized protein. (554 aa)
	C3Y0Y2_BRAFL	Protein kinase domain-containing protein. (1012 aa)
	C3Y2C9_BRAFL	Uncharacterized protein. (609 aa)
	C3Y2H3_BRAFL	Rab-GAP TBC domain-containing protein. (445 aa)
	C3Y6B2_BRAFL	Uncharacterized protein. (1975 aa)
	C3Y7A9_BRAFL	Protein kinase domain-containing protein. (739 aa)
	C3Y7L4_BRAFL	Uncharacterized protein. (197 aa)
	C3Y8L2_BRAFL	Uncharacterized protein. (117 aa)
	C3YEM3_BRAFL	Uncharacterized protein. (481 aa)
	C3YI59_BRAFL	Fork-head domain-containing protein. (157 aa)
	C3YP14_BRAFL	Mitogen-activated protein kinase. (209 aa)
	C3YPU4_BRAFL	CCHC NOA-type domain-containing protein. (873 aa)
	C3YQP4_BRAFL	BZIP domain-containing protein; Belongs to the bZIP family. (321 aa)
	C3YQW5_BRAFL	Uncharacterized protein; Belongs to the peptidase C19 family. (1453 aa)
	C3YSQ4_BRAFL	Uncharacterized protein. (144 aa)
	C3YX71_BRAFL	Uncharacterized protein. (330 aa)
	C3YZR5_BRAFL	Uncharacterized protein. (600 aa)
	C3Z355_BRAFL	Uncharacterized protein. (201 aa)
	C3Z502_BRAFL	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (434 aa)
	C3Z904_BRAFL	Uncharacterized protein. (205 aa)
	C3ZDP9_BRAFL	Uncharacterized protein. (147 aa)
	C3ZHT2_BRAFL	Uncharacterized protein. (281 aa)
	C3ZI98_BRAFL	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (776 aa)
	C3ZI99_BRAFL	Uncharacterized protein. (117 aa)
	C3ZJR3_BRAFL	Uncharacterized protein. (118 aa)
	C3ZMJ1_BRAFL	Uncharacterized protein. (188 aa)
	C3ZNT2_BRAFL	Autophagy protein 5; Involved in autophagic vesicle formation. (261 aa)
	C3ZWV2_BRAFL	Uncharacterized protein. (1163 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPY9_BRAFL	C3XXF8_BRAFL	C3XPY9	C3XXF8	Protein kinase domain-containing protein.	Uncharacterized protein.	0.754
C3XPY9_BRAFL	C3Y2C9_BRAFL	C3XPY9	C3Y2C9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.971
C3XPY9_BRAFL	C3YEM3_BRAFL	C3XPY9	C3YEM3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.953
C3XPY9_BRAFL	C3YI59_BRAFL	C3XPY9	C3YI59	Protein kinase domain-containing protein.	Fork-head domain-containing protein.	0.483
C3XPY9_BRAFL	C3YQW5_BRAFL	C3XPY9	C3YQW5	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.445
C3XPY9_BRAFL	C3YSQ4_BRAFL	C3XPY9	C3YSQ4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.900
C3XPY9_BRAFL	C3YZR5_BRAFL	C3XPY9	C3YZR5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.971
C3XPY9_BRAFL	C3Z502_BRAFL	C3XPY9	C3Z502	Protein kinase domain-containing protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.997
C3XPY9_BRAFL	C3ZDP9_BRAFL	C3XPY9	C3ZDP9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.593
C3XPY9_BRAFL	C3ZHT2_BRAFL	C3XPY9	C3ZHT2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.709
C3XPY9_BRAFL	C3ZI98_BRAFL	C3XPY9	C3ZI98	Protein kinase domain-containing protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.990
C3XPY9_BRAFL	C3ZJR3_BRAFL	C3XPY9	C3ZJR3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.929
C3XPY9_BRAFL	C3ZNT2_BRAFL	C3XPY9	C3ZNT2	Protein kinase domain-containing protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.706
C3XPY9_BRAFL	C3ZWV2_BRAFL	C3XPY9	C3ZWV2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.842
C3XQ95_BRAFL	C3Y2C9_BRAFL	C3XQ95	C3Y2C9	Neuroblastoma RAS viral oncogene-like protein.	Uncharacterized protein.	0.436
C3XQ95_BRAFL	C3YZR5_BRAFL	C3XQ95	C3YZR5	Neuroblastoma RAS viral oncogene-like protein.	Uncharacterized protein.	0.436
C3XQ95_BRAFL	C3ZMJ1_BRAFL	C3XQ95	C3ZMJ1	Neuroblastoma RAS viral oncogene-like protein.	Uncharacterized protein.	0.901
C3XR39_BRAFL	C3XXF8_BRAFL	C3XR39	C3XXF8	RHD domain-containing protein.	Uncharacterized protein.	0.564
C3XR39_BRAFL	C3Y2C9_BRAFL	C3XR39	C3Y2C9	RHD domain-containing protein.	Uncharacterized protein.	0.536
C3XR39_BRAFL	C3YQP4_BRAFL	C3XR39	C3YQP4	RHD domain-containing protein.	BZIP domain-containing protein; Belongs to the bZIP family.	0.474