72 items (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S4RDS1_PETMA	Protein kinase domain-containing protein. (970 aa)
	S4RDW8_PETMA	Protein tyrosine phosphatase, non-receptor type 23, b. (1884 aa)
	GGA3	Golgi associated, gamma adaptin ear containing, ARF binding protein 3. (271 aa)
	S4R4P9_PETMA	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (793 aa)
	S4R5A0_PETMA	Uncharacterized protein. (83 aa)
	S4R6R2_PETMA	Vacuolar protein sorting 25 homolog. (179 aa)
	S4R755_PETMA	Uncharacterized protein. (589 aa)
	S4R8K7_PETMA	RING-type domain-containing protein. (208 aa)
	S4R8R8_PETMA	Uncharacterized protein. (118 aa)
	S4R8Y2_PETMA	Uncharacterized protein. (189 aa)
	S4R9K5_PETMA	Synaptobrevin-like 1; Belongs to the synaptobrevin family. (168 aa)
	S4R9T6_PETMA	Uncharacterized protein. (1166 aa)
	S4R9X0_PETMA	Rabenosyn, RAB effector. (650 aa)
	S4RAQ4_PETMA	Battenin. (411 aa)
	SORT1	Sortilin. (714 aa)
	S4RAT2_PETMA	Uncharacterized protein; Belongs to the CD36 family. (489 aa)
	S4RB47_PETMA	Ectopic P-granules autophagy protein 5 homolog (C. elegans). (2394 aa)
	S4RBE7_PETMA	Ankyrin repeat and FYVE domain containing 1. (1168 aa)
	S4RCG4_PETMA	Uncharacterized protein. (370 aa)
	S4RCZ2_PETMA	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (395 aa)
	S4RD39_PETMA	Adaptor related protein complex 3 subunit delta 1. (1230 aa)
	S4RDD9_PETMA	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family. (440 aa)
	S4RDN5_PETMA	ATG_C domain-containing protein. (158 aa)
	SORT1-2	Sortilin. (684 aa)
	S4RDX1_PETMA	Chorein_N domain-containing protein. (96 aa)
	S4RE65_PETMA	Lysosomal trafficking regulator. (3773 aa)
	S4REJ1_PETMA	VPS37C subunit of ESCRT-I. (325 aa)
	S4REN5_PETMA	Vesicle transport through interaction with t-SNAREs 1B. (232 aa)
	S4REP8_PETMA	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog. (486 aa)
	S4RF03_PETMA	Sortilin. (1274 aa)
	S4RF21_PETMA	Adaptin_N domain-containing protein. (187 aa)
	S4RFU2_PETMA	Phosphoinositide-3-kinase, regulatory subunit 4. (647 aa)
	S4RH07_PETMA	Uncharacterized protein. (271 aa)
	S4RHB7_PETMA	Charged multivesicular body protein 5a. (220 aa)
	S4RHG0_PETMA	VPS18 core subunit of CORVET and HOPS complexes. (965 aa)
	S4RIC5_PETMA	VPS51 subunit of GARP complex. (790 aa)
	S4RIT6_PETMA	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family. (848 aa)
	S4RJN9_PETMA	Pleckstrin homology domain containing, family F (with FYVE domain) member 2. (250 aa)
	S4RJR4_PETMA	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family. (351 aa)
	S4RJY1_PETMA	AAA domain-containing protein; Belongs to the AAA ATPase family. (446 aa)
	S4RK45_PETMA	Uncharacterized protein. (510 aa)
	S4RKA1_PETMA	Pleckstrin homology domain containing, family M (with RUN domain) member 1. (1004 aa)
	S4RYF1_PETMA	C-type lectin domain containing 16A. (604 aa)
	S4RKV5_PETMA	Beclin 1, autophagy related. (459 aa)
	LEPROT	Leptin receptor overlapping transcript. (131 aa)
	S4RLN6_PETMA	Transmembrane protein 106Bb. (204 aa)
	S4RLY6_PETMA	VPS54 subunit of GARP complex. (933 aa)
	S4RM90_PETMA	VPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family. (575 aa)
	S4RMS1_PETMA	Uncharacterized protein. (161 aa)
	RNF157	Ring finger protein 157. (558 aa)
	S4RN16_PETMA	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (258 aa)
	S4RNR7_PETMA	Uncharacterized protein. (362 aa)
	S4RQL0_PETMA	UEV domain-containing protein. (115 aa)
	S4RRZ2_PETMA	Akt interacting protein. (293 aa)
	S4RSD1_PETMA	VPS9 domain-containing protein. (230 aa)
	S4RSG4_PETMA	VPS39 subunit of HOPS complex. (414 aa)
	ATG14	Autophagy related 14. (494 aa)
	S4RTJ7_PETMA	Protein kinase domain-containing protein. (314 aa)
	S4RTR2_PETMA	t-SNARE coiled-coil homology domain-containing protein. (239 aa)
	S4RU07_PETMA	Charged multivesicular body protein 3. (222 aa)
	S4RUF6_PETMA	AAA domain-containing protein; Belongs to the AAA ATPase family. (334 aa)
	S4RUT1_PETMA	MON1 secretory trafficking family member A. (434 aa)
	S4RV94_PETMA	Si:dkey-3h3.3. (216 aa)
	S4RVM2_PETMA	Granulin b. (757 aa)
	S4RVX1_PETMA	Zgc:100846. (474 aa)
	S4RWV1_PETMA	Uncharacterized protein. (294 aa)
	S4RXC1_PETMA	Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family. (937 aa)
	S4RXG3_PETMA	Uncharacterized protein. (269 aa)
	S4RXI6_PETMA	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (415 aa)
	S4RXJ2_PETMA	Calponin-homology (CH) domain-containing protein. (712 aa)
	S4RXQ5_PETMA	Uncharacterized protein. (1277 aa)
	S4RYB9_PETMA	RING-type domain-containing protein. (205 aa)

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG14	S4RB47_PETMA	ENSPMAP00000008458	ENSPMAP00000002428	Autophagy related 14.	Ectopic P-granules autophagy protein 5 homolog (C. elegans).	0.479
ATG14	S4RFU2_PETMA	ENSPMAP00000008458	ENSPMAP00000004074	Autophagy related 14.	Phosphoinositide-3-kinase, regulatory subunit 4.	0.989
ATG14	S4RKA1_PETMA	ENSPMAP00000008458	ENSPMAP00000005634	Autophagy related 14.	Pleckstrin homology domain containing, family M (with RUN domain) member 1.	0.470
ATG14	S4RKV5_PETMA	ENSPMAP00000008458	ENSPMAP00000005838	Autophagy related 14.	Beclin 1, autophagy related.	0.998
ATG14	S4RTJ7_PETMA	ENSPMAP00000008458	ENSPMAP00000008537	Autophagy related 14.	Protein kinase domain-containing protein.	0.989
GGA3	S4RQL0_PETMA	ENSPMAP00000010361	ENSPMAP00000007496	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	UEV domain-containing protein.	0.574
GGA3	SORT1	ENSPMAP00000010361	ENSPMAP00000002301	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Sortilin.	0.430
GGA3	SORT1-2	ENSPMAP00000010361	ENSPMAP00000003344	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Sortilin.	0.430
S4R4P9_PETMA	S4R9K5_PETMA	ENSPMAP00000000178	ENSPMAP00000001886	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	0.478
S4R4P9_PETMA	S4RBE7_PETMA	ENSPMAP00000000178	ENSPMAP00000002528	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Ankyrin repeat and FYVE domain containing 1.	0.517
S4R4P9_PETMA	S4RDN5_PETMA	ENSPMAP00000000178	ENSPMAP00000003317	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	ATG_C domain-containing protein.	0.604
S4R4P9_PETMA	S4RDX1_PETMA	ENSPMAP00000000178	ENSPMAP00000003403	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Chorein_N domain-containing protein.	0.604
S4R4P9_PETMA	S4RF03_PETMA	ENSPMAP00000000178	ENSPMAP00000003785	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Sortilin.	0.706
S4R4P9_PETMA	S4RHG0_PETMA	ENSPMAP00000000178	ENSPMAP00000004642	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	VPS18 core subunit of CORVET and HOPS complexes.	0.501
S4R4P9_PETMA	S4RKV5_PETMA	ENSPMAP00000000178	ENSPMAP00000005838	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Beclin 1, autophagy related.	0.474
S4R4P9_PETMA	S4RLY6_PETMA	ENSPMAP00000000178	ENSPMAP00000006222	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	VPS54 subunit of GARP complex.	0.557
S4R4P9_PETMA	S4RSG4_PETMA	ENSPMAP00000000178	ENSPMAP00000008153	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	VPS39 subunit of HOPS complex.	0.639
S4R4P9_PETMA	S4RTR2_PETMA	ENSPMAP00000000178	ENSPMAP00000008602	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	t-SNARE coiled-coil homology domain-containing protein.	0.501
S4R4P9_PETMA	S4RWV1_PETMA	ENSPMAP00000000178	ENSPMAP00000009691	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.417
S4R4P9_PETMA	S4RXG3_PETMA	ENSPMAP00000000178	ENSPMAP00000009904	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.417