32 items (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S4R5E4_PETMA	Uncharacterized protein. (773 aa)
	S4R5N3_PETMA	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (210 aa)
	S4R606_PETMA	Uncharacterized protein. (188 aa)
	S4R6X7_PETMA	Nucleoporin 62 like. (545 aa)
	S4R8H1_PETMA	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (199 aa)
	S4RAV4_PETMA	Peptidase S59 domain-containing protein. (1883 aa)
	S4RB21_PETMA	NDC1 transmembrane nucleoporin. (424 aa)
	S4RB54_PETMA	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (163 aa)
	S4RBG4_PETMA	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (252 aa)
	S4RBZ6_PETMA	Uncharacterized protein. (816 aa)
	S4RCC0_PETMA	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (112 aa)
	S4RD63_PETMA	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (805 aa)
	S4RG25_PETMA	Nucleoporin 133. (1133 aa)
	S4RGF0_PETMA	Nucleoporin 42. (402 aa)
	S4RH17_PETMA	Uncharacterized protein. (289 aa)
	S4RHF3_PETMA	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (220 aa)
	S4RHL2_PETMA	Nucleoporin 205. (2014 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (793 aa)
	S4RMF3_PETMA	Nucleoporin 58. (379 aa)
	S4RMH0_PETMA	Uncharacterized protein. (731 aa)
	NUP54	Nucleoporin 54. (506 aa)
	S4RPP8_PETMA	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (234 aa)
	S4RPT7_PETMA	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (666 aa)
	S4RQ18_PETMA	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (325 aa)
	S4RQG5_PETMA	Nucleoporin 155. (1266 aa)
	S4RQS4_PETMA	WD_REPEATS_REGION domain-containing protein. (364 aa)
	RANBP2	RAN binding protein 2. (2471 aa)
	S4RSK9_PETMA	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (168 aa)
	S4RW40_PETMA	Nup214_FG domain-containing protein. (198 aa)
	S4RWP9_PETMA	Nucleoporin 50. (462 aa)
	S4RXH6_PETMA	Nucleoporin 88. (488 aa)
	S4RYI9_PETMA	Peptidase S59 domain-containing protein. (910 aa)

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NCBP1	NUP54	ENSPMAP00000006129	ENSPMAP00000006621	Nuclear cap binding protein subunit 1.	Nucleoporin 54.	0.700
NCBP1	RANBP2	ENSPMAP00000006129	ENSPMAP00000007926	Nuclear cap binding protein subunit 1.	RAN binding protein 2.	0.983
NCBP1	S4R5N3_PETMA	ENSPMAP00000006129	ENSPMAP00000000513	Nuclear cap binding protein subunit 1.	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.	0.671
NCBP1	S4R606_PETMA	ENSPMAP00000006129	ENSPMAP00000000636	Nuclear cap binding protein subunit 1.	Uncharacterized protein.	0.702
NCBP1	S4R6X7_PETMA	ENSPMAP00000006129	ENSPMAP00000000957	Nuclear cap binding protein subunit 1.	Nucleoporin 62 like.	0.666
NCBP1	S4R8H1_PETMA	ENSPMAP00000006129	ENSPMAP00000001502	Nuclear cap binding protein subunit 1.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.917
NCBP1	S4RAV4_PETMA	ENSPMAP00000006129	ENSPMAP00000002335	Nuclear cap binding protein subunit 1.	Peptidase S59 domain-containing protein.	0.710
NCBP1	S4RB21_PETMA	ENSPMAP00000006129	ENSPMAP00000002402	Nuclear cap binding protein subunit 1.	NDC1 transmembrane nucleoporin.	0.659
NCBP1	S4RBG4_PETMA	ENSPMAP00000006129	ENSPMAP00000002545	Nuclear cap binding protein subunit 1.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.698
NCBP1	S4RBZ6_PETMA	ENSPMAP00000006129	ENSPMAP00000002728	Nuclear cap binding protein subunit 1.	Uncharacterized protein.	0.813
NCBP1	S4RD63_PETMA	ENSPMAP00000006129	ENSPMAP00000003145	Nuclear cap binding protein subunit 1.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.695
NCBP1	S4RG25_PETMA	ENSPMAP00000006129	ENSPMAP00000004157	Nuclear cap binding protein subunit 1.	Nucleoporin 133.	0.720
NCBP1	S4RGF0_PETMA	ENSPMAP00000006129	ENSPMAP00000004282	Nuclear cap binding protein subunit 1.	Nucleoporin 42.	0.616
NCBP1	S4RH17_PETMA	ENSPMAP00000006129	ENSPMAP00000004499	Nuclear cap binding protein subunit 1.	Uncharacterized protein.	0.753
NCBP1	S4RHF3_PETMA	ENSPMAP00000006129	ENSPMAP00000004635	Nuclear cap binding protein subunit 1.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.983
NCBP1	S4RHL2_PETMA	ENSPMAP00000006129	ENSPMAP00000004694	Nuclear cap binding protein subunit 1.	Nucleoporin 205.	0.694
NCBP1	S4RMF3_PETMA	ENSPMAP00000006129	ENSPMAP00000006389	Nuclear cap binding protein subunit 1.	Nucleoporin 58.	0.670
NCBP1	S4RMH0_PETMA	ENSPMAP00000006129	ENSPMAP00000006406	Nuclear cap binding protein subunit 1.	Uncharacterized protein.	0.741
NCBP1	S4RPP8_PETMA	ENSPMAP00000006129	ENSPMAP00000007184	Nuclear cap binding protein subunit 1.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.994
NCBP1	S4RPT7_PETMA	ENSPMAP00000006129	ENSPMAP00000007223	Nuclear cap binding protein subunit 1.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.726