48 items (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S4RVU7_PETMA	Uncharacterized protein. (90 aa)
	S4RW40_PETMA	Nup214_FG domain-containing protein. (198 aa)
	S4RWK7_PETMA	IF rod domain-containing protein; Belongs to the intermediate filament family. (131 aa)
	S4RWL0_PETMA	IF rod domain-containing protein; Belongs to the intermediate filament family. (222 aa)
	S4RVT8_PETMA	FCP1 homology domain-containing protein. (185 aa)
	S4RVJ1_PETMA	CTD nuclear envelope phosphatase 1a. (129 aa)
	S4RUE1_PETMA	Uncharacterized protein. (214 aa)
	RANBP2	RAN binding protein 2. (2471 aa)
	S4RQS4_PETMA	WD_REPEATS_REGION domain-containing protein. (364 aa)
	S4RQG5_PETMA	Nucleoporin 155. (1266 aa)
	S4RQ18_PETMA	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (325 aa)
	S4RPT7_PETMA	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (666 aa)
	NUP54	Nucleoporin 54. (506 aa)
	S4RMV4_PETMA	Lipin_mid domain-containing protein. (418 aa)
	S4RMH0_PETMA	Uncharacterized protein. (731 aa)
	S4RMF3_PETMA	Nucleoporin 58. (379 aa)
	S4RLF0_PETMA	Barrier to autointegration factor 1. (90 aa)
	LEMD3	LEM domain containing 3. (480 aa)
	S4RHL2_PETMA	Nucleoporin 205. (2014 aa)
	S4RHF3_PETMA	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (220 aa)
	NCOA5	Nuclear receptor coactivator 5. (591 aa)
	S4RH17_PETMA	Uncharacterized protein. (289 aa)
	S4RGV0_PETMA	Uncharacterized protein. (168 aa)
	S4RGF0_PETMA	Nucleoporin 42. (402 aa)
	S4RG80_PETMA	VRK serine/threonine kinase 1. (225 aa)
	S4RG25_PETMA	Nucleoporin 133. (1133 aa)
	NEK9	NIMA related kinase 9. (792 aa)
	S4REH4_PETMA	Lamin B2; Belongs to the intermediate filament family. (584 aa)
	S4RD63_PETMA	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (805 aa)
	S4RCC0_PETMA	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (112 aa)
	S4RBZ6_PETMA	Uncharacterized protein. (816 aa)
	S4RBX2_PETMA	MSC domain-containing protein. (167 aa)
	S4RBG4_PETMA	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (252 aa)
	S4RB54_PETMA	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (163 aa)
	S4RB21_PETMA	NDC1 transmembrane nucleoporin. (424 aa)
	S4RAV4_PETMA	Peptidase S59 domain-containing protein. (1883 aa)
	S4RA00_PETMA	Uncharacterized protein. (542 aa)
	S4R7D7_PETMA	FCP1 homology domain-containing protein. (374 aa)
	S4R6X7_PETMA	Nucleoporin 62 like. (545 aa)
	S4R606_PETMA	Uncharacterized protein. (188 aa)
	S4R5N3_PETMA	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (210 aa)
	S4R5E4_PETMA	Uncharacterized protein. (773 aa)
	S4R4W9_PETMA	Cyclin B2; Belongs to the cyclin family. (396 aa)
	S4RWL5_PETMA	Lamin B2; Belongs to the intermediate filament family. (385 aa)
	S4RZW0_PETMA	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2b. (475 aa)
	S4RWP9_PETMA	Nucleoporin 50. (462 aa)
	S4RXH6_PETMA	Nucleoporin 88. (488 aa)
	S4RYI9_PETMA	Peptidase S59 domain-containing protein. (910 aa)

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LEMD3	S4REH4_PETMA	ENSPMAP00000005175	ENSPMAP00000003606	LEM domain containing 3.	Lamin B2; Belongs to the intermediate filament family.	0.665
LEMD3	S4RLF0_PETMA	ENSPMAP00000005175	ENSPMAP00000006036	LEM domain containing 3.	Barrier to autointegration factor 1.	0.753
LEMD3	S4RVU7_PETMA	ENSPMAP00000005175	ENSPMAP00000009337	LEM domain containing 3.	Uncharacterized protein.	0.753
LEMD3	S4RWK7_PETMA	ENSPMAP00000005175	ENSPMAP00000009597	LEM domain containing 3.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.665
LEMD3	S4RWL0_PETMA	ENSPMAP00000005175	ENSPMAP00000009600	LEM domain containing 3.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.665
LEMD3	S4RWL5_PETMA	ENSPMAP00000005175	ENSPMAP00000009605	LEM domain containing 3.	Lamin B2; Belongs to the intermediate filament family.	0.665
NCOA5	NEK9	ENSPMAP00000004627	ENSPMAP00000004090	Nuclear receptor coactivator 5.	NIMA related kinase 9.	0.491
NCOA5	NUP54	ENSPMAP00000004627	ENSPMAP00000006621	Nuclear receptor coactivator 5.	Nucleoporin 54.	0.953
NCOA5	RANBP2	ENSPMAP00000004627	ENSPMAP00000007926	Nuclear receptor coactivator 5.	RAN binding protein 2.	0.999
NCOA5	S4R4W9_PETMA	ENSPMAP00000004627	ENSPMAP00000000249	Nuclear receptor coactivator 5.	Cyclin B2; Belongs to the cyclin family.	0.461
NCOA5	S4R5E4_PETMA	ENSPMAP00000004627	ENSPMAP00000000424	Nuclear receptor coactivator 5.	Uncharacterized protein.	0.825
NCOA5	S4R5N3_PETMA	ENSPMAP00000004627	ENSPMAP00000000513	Nuclear receptor coactivator 5.	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.	0.951
NCOA5	S4R606_PETMA	ENSPMAP00000004627	ENSPMAP00000000636	Nuclear receptor coactivator 5.	Uncharacterized protein.	0.518
NCOA5	S4R6X7_PETMA	ENSPMAP00000004627	ENSPMAP00000000957	Nuclear receptor coactivator 5.	Nucleoporin 62 like.	0.876
NCOA5	S4RA00_PETMA	ENSPMAP00000004627	ENSPMAP00000002031	Nuclear receptor coactivator 5.	Uncharacterized protein.	0.821
NCOA5	S4RB21_PETMA	ENSPMAP00000004627	ENSPMAP00000002402	Nuclear receptor coactivator 5.	NDC1 transmembrane nucleoporin.	0.750
NCOA5	S4RB54_PETMA	ENSPMAP00000004627	ENSPMAP00000002435	Nuclear receptor coactivator 5.	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.872
NCOA5	S4RBG4_PETMA	ENSPMAP00000004627	ENSPMAP00000002545	Nuclear receptor coactivator 5.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.934
NCOA5	S4RBZ6_PETMA	ENSPMAP00000004627	ENSPMAP00000002728	Nuclear receptor coactivator 5.	Uncharacterized protein.	0.896
NCOA5	S4RCC0_PETMA	ENSPMAP00000004627	ENSPMAP00000002852	Nuclear receptor coactivator 5.	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.872