88 items (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S4RMH0_PETMA	Uncharacterized protein. (731 aa)
	S4R5E4_PETMA	Uncharacterized protein. (773 aa)
	S4R5L5_PETMA	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (744 aa)
	S4R5N3_PETMA	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (210 aa)
	S4R606_PETMA	Uncharacterized protein. (188 aa)
	S4R6X7_PETMA	Nucleoporin 62 like. (545 aa)
	TFE3	Transcription factor binding to IGHM enhancer 3. (348 aa)
	S4R7Q0_PETMA	Parkinson protein 7. (189 aa)
	S4R804_PETMA	Uncharacterized protein. (481 aa)
	S4R953_PETMA	Ubiquitin-conjugating enzyme E2Ia; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	S4R9F0_PETMA	Dimer_Tnp_hAT domain-containing protein. (505 aa)
	S4R9J7_PETMA	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (160 aa)
	S4RA00_PETMA	Uncharacterized protein. (542 aa)
	S4RAV4_PETMA	Peptidase S59 domain-containing protein. (1883 aa)
	S4RAY0_PETMA	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (99 aa)
	ENSPMAP00000002379	annotation not available (99 aa)
	ENSPMAP00000002380	annotation not available (99 aa)
	ENSPMAP00000002382	annotation not available (99 aa)
	S4RB21_PETMA	NDC1 transmembrane nucleoporin. (424 aa)
	S4RB54_PETMA	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (163 aa)
	S4RBG4_PETMA	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (252 aa)
	S4RBZ6_PETMA	Uncharacterized protein. (816 aa)
	S4RCC0_PETMA	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (112 aa)
	S4RD63_PETMA	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (805 aa)
	S4RDQ1_PETMA	Cilia and flagella associated protein 53. (487 aa)
	S4RE17_PETMA	Si:dkey-119f1.1. (1053 aa)
	S4RE80_PETMA	Uncharacterized protein. (216 aa)
	S4RFP6_PETMA	Nuclear receptor domain-containing protein. (164 aa)
	S4RG25_PETMA	Nucleoporin 133. (1133 aa)
	S4RG48_PETMA	Ubiquitin-like with PHD and ring finger domains 1. (800 aa)
	S4RGF0_PETMA	Nucleoporin 42. (402 aa)
	S4RGV0_PETMA	Uncharacterized protein. (168 aa)
	S4RH10_PETMA	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids. (349 aa)
	S4RH17_PETMA	Uncharacterized protein. (289 aa)
	NCOA5	Nuclear receptor coactivator 5. (591 aa)
	S4RHF3_PETMA	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (220 aa)
	S4RHL2_PETMA	Nucleoporin 205. (2014 aa)
	S4RHT7_PETMA	Uncharacterized protein. (252 aa)
	S4RHV6_PETMA	NR LBD domain-containing protein. (274 aa)
	S4RJK6_PETMA	Helicase C-terminal domain-containing protein. (611 aa)
	S4RJL8_PETMA	Melanocyte inducing transcription factor a. (237 aa)
	S4RJQ2_PETMA	Nucleophosmin 1b. (274 aa)
	S4RKW4_PETMA	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (762 aa)
	S4RKZ0_PETMA	DNA-binding protein SATB. (619 aa)
	S4RL57_PETMA	Baculoviral IAP repeat containing 5a. (143 aa)
	S4RLI2_PETMA	Uncharacterized protein. (500 aa)
	S4RM55_PETMA	Thyroid hormone receptor beta. (396 aa)
	S4RMF3_PETMA	Nucleoporin 58. (379 aa)
	NUP54	Nucleoporin 54. (506 aa)
	S4RND7_PETMA	BTB domain-containing protein. (90 aa)
	S4RNH8_PETMA	SP-RING-type domain-containing protein. (142 aa)
	S4RNR3_PETMA	Zinc finger protein 131. (602 aa)
	S4RP20_PETMA	Thymine DNA glycosylase, tandem duplicate 2. (424 aa)
	S4RPT7_PETMA	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (666 aa)
	S4RQ11_PETMA	Bmi1 polycomb ring finger oncogene 1b. (207 aa)
	S4RQ18_PETMA	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (325 aa)
	S4RQC7_PETMA	Xeroderma pigmentosum, complementation group C. (642 aa)
	S4RQG5_PETMA	Nucleoporin 155. (1266 aa)
	S4RQN3_PETMA	Uncharacterized protein. (391 aa)
	S4RQS4_PETMA	WD_REPEATS_REGION domain-containing protein. (364 aa)
	S4RQW7_PETMA	BRCT domain-containing protein. (751 aa)
	S4RR91_PETMA	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (348 aa)
	S4RRM5_PETMA	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1231 aa)
	RANBP2	RAN binding protein 2. (2471 aa)
	S4RSA8_PETMA	Uncharacterized protein. (200 aa)
	S4RSK3_PETMA	Uncharacterized protein. (327 aa)
	S4RTM7_PETMA	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
	S4RTX2_PETMA	Rep_fac-A_C domain-containing protein. (203 aa)
	S4RTX7_PETMA	Uncharacterized protein. (84 aa)
	S4RU29_PETMA	NOP58 ribonucleoprotein homolog (yeast). (545 aa)
	S4RU65_PETMA	PHD-type domain-containing protein. (150 aa)
	S4RUE1_PETMA	Uncharacterized protein. (214 aa)
	S4RUE7_PETMA	BED-type domain-containing protein. (628 aa)
	S4RUI7_PETMA	Uncharacterized protein. (674 aa)
	S4RUQ4_PETMA	Rep_fac-A_C domain-containing protein. (223 aa)
	S4RW17_PETMA	NSE1 homolog, SMC5-SMC6 complex component. (245 aa)
	S4RW40_PETMA	Nup214_FG domain-containing protein. (198 aa)
	S4RWA0_PETMA	BHLH domain-containing protein. (139 aa)
	S4RWP9_PETMA	Nucleoporin 50. (462 aa)
	S4RWQ7_PETMA	Thyroid hormone receptor beta. (400 aa)
	S4RXH6_PETMA	Nucleoporin 88. (488 aa)
	S4RYI9_PETMA	Peptidase S59 domain-containing protein. (910 aa)
	S4RZT2_PETMA	Uncharacterized protein. (168 aa)
	S4S011_PETMA	Von Hippel-Lindau tumor suppressor like. (190 aa)
	S4S162_PETMA	Forkhead box L2b. (120 aa)
	S4R4D8_PETMA	Methionine sulfoxide reductase B1b. (472 aa)
	S4R4J8_PETMA	RAN GTPase activating protein 1a. (635 aa)
	RAD21	RAD21 cohesin complex component. (662 aa)

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMAP00000002379	RAD21	ENSPMAP00000002379	ENSPMAP00000000310	annotation not available	RAD21 cohesin complex component.	0.449
ENSPMAP00000002379	S4R4D8_PETMA	ENSPMAP00000002379	ENSPMAP00000000067	annotation not available	Methionine sulfoxide reductase B1b.	0.426
ENSPMAP00000002379	S4R606_PETMA	ENSPMAP00000002379	ENSPMAP00000000636	annotation not available	Uncharacterized protein.	0.470
ENSPMAP00000002379	S4R953_PETMA	ENSPMAP00000002379	ENSPMAP00000001734	annotation not available	Ubiquitin-conjugating enzyme E2Ia; Belongs to the ubiquitin-conjugating enzyme family.	0.579
ENSPMAP00000002379	S4R9J7_PETMA	ENSPMAP00000002379	ENSPMAP00000001878	annotation not available	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.589
ENSPMAP00000002379	S4RE17_PETMA	ENSPMAP00000002379	ENSPMAP00000003449	annotation not available	Si:dkey-119f1.1.	0.489
ENSPMAP00000002379	S4RHT7_PETMA	ENSPMAP00000002379	ENSPMAP00000004769	annotation not available	Uncharacterized protein.	0.612
ENSPMAP00000002379	S4RJQ2_PETMA	ENSPMAP00000002379	ENSPMAP00000005435	annotation not available	Nucleophosmin 1b.	0.674
ENSPMAP00000002379	S4RQ11_PETMA	ENSPMAP00000002379	ENSPMAP00000007297	annotation not available	Bmi1 polycomb ring finger oncogene 1b.	0.607
ENSPMAP00000002379	S4RQW7_PETMA	ENSPMAP00000002379	ENSPMAP00000007603	annotation not available	BRCT domain-containing protein.	0.791
ENSPMAP00000002379	S4RR91_PETMA	ENSPMAP00000002379	ENSPMAP00000007727	annotation not available	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	0.401
ENSPMAP00000002379	S4RRM5_PETMA	ENSPMAP00000002379	ENSPMAP00000007861	annotation not available	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	0.401
ENSPMAP00000002379	S4RTX2_PETMA	ENSPMAP00000002379	ENSPMAP00000008662	annotation not available	Rep_fac-A_C domain-containing protein.	0.444
ENSPMAP00000002379	S4RTX7_PETMA	ENSPMAP00000002379	ENSPMAP00000008667	annotation not available	Uncharacterized protein.	0.579
ENSPMAP00000002379	S4RU65_PETMA	ENSPMAP00000002379	ENSPMAP00000008755	annotation not available	PHD-type domain-containing protein.	0.402
ENSPMAP00000002379	S4RUQ4_PETMA	ENSPMAP00000002379	ENSPMAP00000008944	annotation not available	Rep_fac-A_C domain-containing protein.	0.444
ENSPMAP00000002380	RAD21	ENSPMAP00000002380	ENSPMAP00000000310	annotation not available	RAD21 cohesin complex component.	0.449
ENSPMAP00000002380	S4R4D8_PETMA	ENSPMAP00000002380	ENSPMAP00000000067	annotation not available	Methionine sulfoxide reductase B1b.	0.426
ENSPMAP00000002380	S4R606_PETMA	ENSPMAP00000002380	ENSPMAP00000000636	annotation not available	Uncharacterized protein.	0.470
ENSPMAP00000002380	S4R953_PETMA	ENSPMAP00000002380	ENSPMAP00000001734	annotation not available	Ubiquitin-conjugating enzyme E2Ia; Belongs to the ubiquitin-conjugating enzyme family.	0.579