28 items (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S4RBZ6_PETMA	Uncharacterized protein. (816 aa)
	S4RD63_PETMA	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (805 aa)
	S4RG25_PETMA	Nucleoporin 133. (1133 aa)
	S4RGF0_PETMA	Nucleoporin 42. (402 aa)
	S4R4W9_PETMA	Cyclin B2; Belongs to the cyclin family. (396 aa)
	S4R5E4_PETMA	Uncharacterized protein. (773 aa)
	S4R5N3_PETMA	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (210 aa)
	S4RYI9_PETMA	Peptidase S59 domain-containing protein. (910 aa)
	S4RXH6_PETMA	Nucleoporin 88. (488 aa)
	S4RWP9_PETMA	Nucleoporin 50. (462 aa)
	S4RW40_PETMA	Nup214_FG domain-containing protein. (198 aa)
	RANBP2	RAN binding protein 2. (2471 aa)
	S4RQS4_PETMA	WD_REPEATS_REGION domain-containing protein. (364 aa)
	S4RQG5_PETMA	Nucleoporin 155. (1266 aa)
	S4RQ18_PETMA	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (325 aa)
	S4RPT7_PETMA	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (666 aa)
	NUP54	Nucleoporin 54. (506 aa)
	S4RMH0_PETMA	Uncharacterized protein. (731 aa)
	S4RMF3_PETMA	Nucleoporin 58. (379 aa)
	S4RHL2_PETMA	Nucleoporin 205. (2014 aa)
	S4RHF3_PETMA	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (220 aa)
	S4RH17_PETMA	Uncharacterized protein. (289 aa)
	S4R606_PETMA	Uncharacterized protein. (188 aa)
	S4R6X7_PETMA	Nucleoporin 62 like. (545 aa)
	S4RAV4_PETMA	Peptidase S59 domain-containing protein. (1883 aa)
	S4RB21_PETMA	NDC1 transmembrane nucleoporin. (424 aa)
	S4RB54_PETMA	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (163 aa)
	S4RBG4_PETMA	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (252 aa)

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NUP54	RANBP2	ENSPMAP00000006621	ENSPMAP00000007926	Nucleoporin 54.	RAN binding protein 2.	0.999
NUP54	S4R5E4_PETMA	ENSPMAP00000006621	ENSPMAP00000000424	Nucleoporin 54.	Uncharacterized protein.	0.912
NUP54	S4R5N3_PETMA	ENSPMAP00000006621	ENSPMAP00000000513	Nucleoporin 54.	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.	0.992
NUP54	S4R606_PETMA	ENSPMAP00000006621	ENSPMAP00000000636	Nucleoporin 54.	Uncharacterized protein.	0.922
NUP54	S4R6X7_PETMA	ENSPMAP00000006621	ENSPMAP00000000957	Nucleoporin 54.	Nucleoporin 62 like.	0.999
NUP54	S4RAV4_PETMA	ENSPMAP00000006621	ENSPMAP00000002335	Nucleoporin 54.	Peptidase S59 domain-containing protein.	0.987
NUP54	S4RB21_PETMA	ENSPMAP00000006621	ENSPMAP00000002402	Nucleoporin 54.	NDC1 transmembrane nucleoporin.	0.974
NUP54	S4RB54_PETMA	ENSPMAP00000006621	ENSPMAP00000002435	Nucleoporin 54.	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.971
NUP54	S4RBG4_PETMA	ENSPMAP00000006621	ENSPMAP00000002545	Nucleoporin 54.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.994
NUP54	S4RBZ6_PETMA	ENSPMAP00000006621	ENSPMAP00000002728	Nucleoporin 54.	Uncharacterized protein.	0.992
NUP54	S4RD63_PETMA	ENSPMAP00000006621	ENSPMAP00000003145	Nucleoporin 54.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.998
NUP54	S4RG25_PETMA	ENSPMAP00000006621	ENSPMAP00000004157	Nucleoporin 54.	Nucleoporin 133.	0.993
NUP54	S4RGF0_PETMA	ENSPMAP00000006621	ENSPMAP00000004282	Nucleoporin 54.	Nucleoporin 42.	0.707
NUP54	S4RH17_PETMA	ENSPMAP00000006621	ENSPMAP00000004499	Nucleoporin 54.	Uncharacterized protein.	0.973
NUP54	S4RHF3_PETMA	ENSPMAP00000006621	ENSPMAP00000004635	Nucleoporin 54.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.999
NUP54	S4RHL2_PETMA	ENSPMAP00000006621	ENSPMAP00000004694	Nucleoporin 54.	Nucleoporin 205.	0.998
NUP54	S4RMF3_PETMA	ENSPMAP00000006621	ENSPMAP00000006389	Nucleoporin 54.	Nucleoporin 58.	0.995
NUP54	S4RMH0_PETMA	ENSPMAP00000006621	ENSPMAP00000006406	Nucleoporin 54.	Uncharacterized protein.	0.946
NUP54	S4RPT7_PETMA	ENSPMAP00000006621	ENSPMAP00000007223	Nucleoporin 54.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.993
NUP54	S4RQ18_PETMA	ENSPMAP00000006621	ENSPMAP00000007304	Nucleoporin 54.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.980