11 items (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBX1-3	Uncharacterized protein. (208 aa)
	S4RR03_PETMA	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (500 aa)
	S4RKP2_PETMA	Essential meiotic structure-specific endonuclease 1. (388 aa)
	S4RJN0_PETMA	SPO11 initiator of meiotic double stranded breaks. (190 aa)
	CBX1-2	Uncharacterized protein. (210 aa)
	CBX1	Uncharacterized protein. (188 aa)
	RAD21-2	RAD21 cohesin complex component. (413 aa)
	RAD21	RAD21 cohesin complex component. (662 aa)
	S4RU02_PETMA	Mitotic arrest deficient 2 like 2. (215 aa)
	CBX1-4	Uncharacterized protein. (198 aa)
	S4RWM6_PETMA	Testis expressed 11. (915 aa)

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RAD21	S4RJN0_PETMA	ENSPMAP00000000310	ENSPMAP00000005413	RAD21 cohesin complex component.	SPO11 initiator of meiotic double stranded breaks.	0.619
RAD21-2	S4RJN0_PETMA	ENSPMAP00000004027	ENSPMAP00000005413	RAD21 cohesin complex component.	SPO11 initiator of meiotic double stranded breaks.	0.619
S4RJN0_PETMA	RAD21	ENSPMAP00000005413	ENSPMAP00000000310	SPO11 initiator of meiotic double stranded breaks.	RAD21 cohesin complex component.	0.619
S4RJN0_PETMA	RAD21-2	ENSPMAP00000005413	ENSPMAP00000004027	SPO11 initiator of meiotic double stranded breaks.	RAD21 cohesin complex component.	0.619
S4RJN0_PETMA	S4RWM6_PETMA	ENSPMAP00000005413	ENSPMAP00000009616	SPO11 initiator of meiotic double stranded breaks.	Testis expressed 11.	0.528
S4RWM6_PETMA	S4RJN0_PETMA	ENSPMAP00000009616	ENSPMAP00000005413	Testis expressed 11.	SPO11 initiator of meiotic double stranded breaks.	0.528