19 items (Leersia perrieri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9UVW7	Uncharacterized protein. (252 aa)
	A0A0D9V2C8	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (448 aa)
	A0A0D9VDQ1	Hist_deacetyl domain-containing protein. (524 aa)
	A0A0D9VDQ7	Hist_deacetyl domain-containing protein. (220 aa)
	A0A0D9VWB5	LisH domain-containing protein. (213 aa)
	A0A0D9W299	Uncharacterized protein. (195 aa)
	A0A0D9W8V6	Uncharacterized protein. (555 aa)
	A0A0D9WBP3	HDAC_interact domain-containing protein. (1362 aa)
	A0A0D9WH10	Hist_deacetyl domain-containing protein. (383 aa)
	A0A0D9WSH9	PX domain-containing protein. (723 aa)
	A0A0D9WU06	Cir_N domain-containing protein. (581 aa)
	A0A0D9WVV2	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (1064 aa)
	A0A0D9WXW7	WD_REPEATS_REGION domain-containing protein. (114 aa)
	A0A0D9X6X0	Uncharacterized protein. (99 aa)
	A0A0D9X6Y6	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (460 aa)
	A0A0D9XFD4	Uncharacterized protein. (359 aa)
	A0A0D9XRL5	Uncharacterized protein. (545 aa)
	A0A0D9XX40	Uncharacterized protein. (184 aa)
	A0A0D9XXI2	Hist_deacetyl domain-containing protein. (437 aa)

Your Current Organism:

Leersia perrieri

NCBI taxonomy Id: 77586
Other names: L. perrieri, Leersia perrieri (A.Camus) Launert

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9UVW7	A0A0D9V2C8	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.798
A0A0D9UVW7	A0A0D9VDQ1	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.798
A0A0D9UVW7	A0A0D9VDQ7	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.798
A0A0D9UVW7	A0A0D9VWB5	Uncharacterized protein.	LisH domain-containing protein.	0.566
A0A0D9UVW7	A0A0D9W8V6	Uncharacterized protein.	Uncharacterized protein.	0.566
A0A0D9UVW7	A0A0D9WH10	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.677
A0A0D9UVW7	A0A0D9WSH9	Uncharacterized protein.	PX domain-containing protein.	0.695
A0A0D9UVW7	A0A0D9WU06	Uncharacterized protein.	Cir_N domain-containing protein.	0.601
A0A0D9UVW7	A0A0D9WVV2	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.677
A0A0D9UVW7	A0A0D9WXW7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.566
A0A0D9UVW7	A0A0D9X6Y6	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.798
A0A0D9UVW7	A0A0D9XFD4	Uncharacterized protein.	Uncharacterized protein.	0.695
A0A0D9UVW7	A0A0D9XRL5	Uncharacterized protein.	Uncharacterized protein.	0.695
A0A0D9UVW7	A0A0D9XX40	Uncharacterized protein.	Uncharacterized protein.	0.695
A0A0D9UVW7	A0A0D9XXI2	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.677
A0A0D9V2C8	A0A0D9UVW7	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Uncharacterized protein.	0.798
A0A0D9V2C8	A0A0D9VWB5	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	LisH domain-containing protein.	0.873
A0A0D9V2C8	A0A0D9W299	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Uncharacterized protein.	0.832
A0A0D9V2C8	A0A0D9W8V6	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Uncharacterized protein.	0.873
A0A0D9V2C8	A0A0D9WBP3	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	HDAC_interact domain-containing protein.	0.798