35 items (Leersia perrieri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9XY73	Uncharacterized protein. (516 aa)
	A0A0D9WJN0	TMF_TATA_bd domain-containing protein. (1007 aa)
	MED6	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (297 aa)
	A0A0D9WR99	DBC1 domain-containing protein. (1371 aa)
	A0A0D9WRP6	HTH cro/C1-type domain-containing protein. (156 aa)
	A0A0D9WWB0	Uncharacterized protein. (99 aa)
	A0A0D9X773	HTH cro/C1-type domain-containing protein. (142 aa)
	A0A0D9XB04	KIX_2 domain-containing protein. (1219 aa)
	A0A0D9XDN8	zf-C2HC5 domain-containing protein. (415 aa)
	MED20	Mediator of RNA polymerase II transcription subunit 20; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (301 aa)
	A0A0D9XFJ6	Uncharacterized protein. (207 aa)
	A0A0D9XU61	Uncharacterized protein. (205 aa)
	A0A0D9WAL4	Uncharacterized protein. (160 aa)
	A0A0D9XZI2	Uncharacterized protein. (168 aa)
	A0A0D9Y0V4	Uncharacterized protein. (382 aa)
	A0A0D9XZP9	TAFII28 domain-containing protein. (214 aa)
	A0A0D9VC03	Uncharacterized protein. (1698 aa)
	A0A0D9VH07	PC4 domain-containing protein. (101 aa)
	A0A0D9VV56	Uncharacterized protein. (230 aa)
	A0A0D9VYM5	Uncharacterized protein. (229 aa)
	A0A0D9VZ25	Transcriptional adapter. (570 aa)
	A0A0D9VZC5	Uncharacterized protein. (327 aa)
	A0A0D9W1N4	ASCH domain-containing protein. (361 aa)
	A0A0D9W1X8	KIX_2 domain-containing protein. (928 aa)
	A0A0D9W861	Uncharacterized protein. (221 aa)
	A0A0D9W363	Uncharacterized protein. (384 aa)
	A0A0D9W717	Uncharacterized protein. (1597 aa)
	A0A0D9UZ10	Uncharacterized protein. (1202 aa)
	A0A0D9UZB9	Uncharacterized protein. (369 aa)
	A0A0D9V1G9	TAF domain-containing protein. (553 aa)
	A0A0D9V230	Uncharacterized protein. (168 aa)
	A0A0D9V459	TAFII28 domain-containing protein. (203 aa)
	A0A0D9V4Q1	Uncharacterized protein. (189 aa)
	A0A0D9V9L4	Uncharacterized protein. (94 aa)
	A0A0D9VBR5	Uncharacterized protein. (339 aa)

Your Current Organism:

Leersia perrieri

NCBI taxonomy Id: 77586
Other names: L. perrieri, Leersia perrieri (A.Camus) Launert

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0D9UZB9	MED20	A0A0D9UZB9	A0A0D9XE81	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 20; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.494
A0A0D9UZB9	MED6	A0A0D9UZB9	A0A0D9WNA4	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.905
A0A0D9V1G9	A0A0D9V459	A0A0D9V1G9	A0A0D9V459	TAF domain-containing protein.	TAFII28 domain-containing protein.	0.992
A0A0D9V1G9	A0A0D9V9L4	A0A0D9V1G9	A0A0D9V9L4	TAF domain-containing protein.	Uncharacterized protein.	0.992
A0A0D9V1G9	A0A0D9VBR5	A0A0D9V1G9	A0A0D9VBR5	TAF domain-containing protein.	Uncharacterized protein.	0.773
A0A0D9V1G9	A0A0D9VV56	A0A0D9V1G9	A0A0D9VV56	TAF domain-containing protein.	Uncharacterized protein.	0.999
A0A0D9V1G9	A0A0D9VZ25	A0A0D9V1G9	A0A0D9VZ25	TAF domain-containing protein.	Transcriptional adapter.	0.989
A0A0D9V1G9	A0A0D9VZC5	A0A0D9V1G9	A0A0D9VZC5	TAF domain-containing protein.	Uncharacterized protein.	0.773
A0A0D9V1G9	A0A0D9XZP9	A0A0D9V1G9	A0A0D9XZP9	TAF domain-containing protein.	TAFII28 domain-containing protein.	0.992
A0A0D9V1G9	A0A0D9Y0V4	A0A0D9V1G9	A0A0D9Y0V4	TAF domain-containing protein.	Uncharacterized protein.	0.773
A0A0D9V1G9	MED6	A0A0D9V1G9	A0A0D9WNA4	TAF domain-containing protein.	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.765
A0A0D9V459	A0A0D9V1G9	A0A0D9V459	A0A0D9V1G9	TAFII28 domain-containing protein.	TAF domain-containing protein.	0.992
A0A0D9V459	A0A0D9VV56	A0A0D9V459	A0A0D9VV56	TAFII28 domain-containing protein.	Uncharacterized protein.	0.989
A0A0D9V459	MED6	A0A0D9V459	A0A0D9WNA4	TAFII28 domain-containing protein.	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.760
A0A0D9V4Q1	A0A0D9VH07	A0A0D9V4Q1	A0A0D9VH07	Uncharacterized protein.	PC4 domain-containing protein.	0.756
A0A0D9V9L4	A0A0D9V1G9	A0A0D9V9L4	A0A0D9V1G9	Uncharacterized protein.	TAF domain-containing protein.	0.992
A0A0D9V9L4	A0A0D9VBR5	A0A0D9V9L4	A0A0D9VBR5	Uncharacterized protein.	Uncharacterized protein.	0.492
A0A0D9V9L4	A0A0D9VV56	A0A0D9V9L4	A0A0D9VV56	Uncharacterized protein.	Uncharacterized protein.	0.986
A0A0D9V9L4	A0A0D9VZ25	A0A0D9V9L4	A0A0D9VZ25	Uncharacterized protein.	Transcriptional adapter.	0.990
A0A0D9V9L4	A0A0D9VZC5	A0A0D9V9L4	A0A0D9VZC5	Uncharacterized protein.	Uncharacterized protein.	0.492