18 items (Leersia perrieri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9V3I7	TAFII55_N domain-containing protein. (200 aa)
	A0A0D9Y0Q7	BTP domain-containing protein. (358 aa)
	A0A0D9XZP9	TAFII28 domain-containing protein. (214 aa)
	A0A0D9VVM0	Uncharacterized protein. (847 aa)
	A0A0D9VW73	BTP domain-containing protein. (376 aa)
	A0A0D9WCR9	Uncharacterized protein. (525 aa)
	A0A0D9WFE2	TAFII55_N domain-containing protein. (196 aa)
	A0A0D9WSK5	Uncharacterized protein. (2995 aa)
	A0A0D9WSM8	Uncharacterized protein. (635 aa)
	A0A0D9WWN5	WD_REPEATS_REGION domain-containing protein. (589 aa)
	A0A0D9XDL5	Peptidase_M1 domain-containing protein. (1490 aa)
	A0A0D9V1G9	TAF domain-containing protein. (553 aa)
	A0A0D9V459	TAFII28 domain-containing protein. (203 aa)
	A0A0D9XDZ9	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. (160 aa)
	A0A0D9V7R6	TFIID_20kDa domain-containing protein. (544 aa)
	A0A0D9V805	TFIID_20kDa domain-containing protein. (443 aa)
	A0A0D9VJV2	BTP domain-containing protein. (337 aa)
	A0A0D9VV56	Uncharacterized protein. (230 aa)

Your Current Organism:

Leersia perrieri

NCBI taxonomy Id: 77586
Other names: L. perrieri, Leersia perrieri (A.Camus) Launert

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9V1G9	A0A0D9V3I7	TAF domain-containing protein.	TAFII55_N domain-containing protein.	0.992
A0A0D9V1G9	A0A0D9V459	TAF domain-containing protein.	TAFII28 domain-containing protein.	0.992
A0A0D9V1G9	A0A0D9V7R6	TAF domain-containing protein.	TFIID_20kDa domain-containing protein.	0.993
A0A0D9V1G9	A0A0D9V805	TAF domain-containing protein.	TFIID_20kDa domain-containing protein.	0.993
A0A0D9V1G9	A0A0D9VJV2	TAF domain-containing protein.	BTP domain-containing protein.	0.985
A0A0D9V1G9	A0A0D9VV56	TAF domain-containing protein.	Uncharacterized protein.	0.999
A0A0D9V1G9	A0A0D9VVM0	TAF domain-containing protein.	Uncharacterized protein.	0.992
A0A0D9V1G9	A0A0D9VW73	TAF domain-containing protein.	BTP domain-containing protein.	0.985
A0A0D9V1G9	A0A0D9WCR9	TAF domain-containing protein.	Uncharacterized protein.	0.992
A0A0D9V1G9	A0A0D9WFE2	TAF domain-containing protein.	TAFII55_N domain-containing protein.	0.992
A0A0D9V1G9	A0A0D9WSK5	TAF domain-containing protein.	Uncharacterized protein.	0.999
A0A0D9V1G9	A0A0D9WSM8	TAF domain-containing protein.	Uncharacterized protein.	0.989
A0A0D9V1G9	A0A0D9WWN5	TAF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.989
A0A0D9V1G9	A0A0D9XDL5	TAF domain-containing protein.	Peptidase_M1 domain-containing protein.	0.999
A0A0D9V1G9	A0A0D9XDZ9	TAF domain-containing protein.	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	0.999
A0A0D9V1G9	A0A0D9XZP9	TAF domain-containing protein.	TAFII28 domain-containing protein.	0.992
A0A0D9V1G9	A0A0D9Y0Q7	TAF domain-containing protein.	BTP domain-containing protein.	0.985
A0A0D9V3I7	A0A0D9V1G9	TAFII55_N domain-containing protein.	TAF domain-containing protein.	0.992
A0A0D9V3I7	A0A0D9V459	TAFII55_N domain-containing protein.	TAFII28 domain-containing protein.	0.979
A0A0D9V3I7	A0A0D9V7R6	TAFII55_N domain-containing protein.	TFIID_20kDa domain-containing protein.	0.980