38 items (Leersia perrieri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9Y0C2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
	A0A0D9Y0Q7	BTP domain-containing protein. (358 aa)
	A0A0D9XZP9	TAFII28 domain-containing protein. (214 aa)
	A0A0D9XWN8	Uncharacterized protein. (220 aa)
	A0A0D9XV56	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (111 aa)
	A0A0D9XNV1	HTH TFE/IIEalpha-type domain-containing protein. (342 aa)
	A0A0D9XJD6	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (279 aa)
	A0A0D9XIC0	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (530 aa)
	A0A0D9XDZ9	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. (160 aa)
	A0A0D9XDL5	Peptidase_M1 domain-containing protein. (1490 aa)
	A0A0D9XA00	Uncharacterized protein. (611 aa)
	A0A0D9X6Y1	HTH TFE/IIEalpha-type domain-containing protein. (543 aa)
	A0A0D9X1G9	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (110 aa)
	A0A0D9WWN5	WD_REPEATS_REGION domain-containing protein. (589 aa)
	A0A0D9WSM8	Uncharacterized protein. (635 aa)
	A0A0D9WSK5	Uncharacterized protein. (2995 aa)
	A0A0D9WGA2	Uncharacterized protein. (155 aa)
	A0A0D9WFE2	TAFII55_N domain-containing protein. (196 aa)
	A0A0D9WEP4	Uncharacterized protein. (389 aa)
	A0A0D9WCR9	Uncharacterized protein. (525 aa)
	A0A0D9WBV6	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
	A0A0D9W1C3	Uncharacterized protein. (720 aa)
	A0A0D9VW73	BTP domain-containing protein. (376 aa)
	A0A0D9VVM0	Uncharacterized protein. (847 aa)
	A0A0D9VV56	Uncharacterized protein. (230 aa)
	A0A0D9VRY5	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (499 aa)
	A0A0D9VQ55	TFIIE beta domain-containing protein. (456 aa)
	A0A0D9VJV2	BTP domain-containing protein. (337 aa)
	A0A0D9VBC7	RPOL4c domain-containing protein. (142 aa)
	A0A0D9VAT5	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	A0A0D9V805	TFIID_20kDa domain-containing protein. (443 aa)
	A0A0D9V7R6	TFIID_20kDa domain-containing protein. (544 aa)
	A0A0D9V6A4	Uncharacterized protein. (449 aa)
	A0A0D9V4E0	Uncharacterized protein. (803 aa)
	A0A0D9V459	TAFII28 domain-containing protein. (203 aa)
	A0A0D9V3I7	TAFII55_N domain-containing protein. (200 aa)
	A0A0D9V1G9	TAF domain-containing protein. (553 aa)
	A0A0D9UZX0	TFIIE beta domain-containing protein. (268 aa)

Your Current Organism:

Leersia perrieri

NCBI taxonomy Id: 77586
Other names: L. perrieri, Leersia perrieri (A.Camus) Launert

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9UZX0	A0A0D9V1G9	TFIIE beta domain-containing protein.	TAF domain-containing protein.	0.883
A0A0D9UZX0	A0A0D9V3I7	TFIIE beta domain-containing protein.	TAFII55_N domain-containing protein.	0.850
A0A0D9UZX0	A0A0D9V459	TFIIE beta domain-containing protein.	TAFII28 domain-containing protein.	0.853
A0A0D9UZX0	A0A0D9V4E0	TFIIE beta domain-containing protein.	Uncharacterized protein.	0.937
A0A0D9UZX0	A0A0D9V6A4	TFIIE beta domain-containing protein.	Uncharacterized protein.	0.981
A0A0D9UZX0	A0A0D9V7R6	TFIIE beta domain-containing protein.	TFIID_20kDa domain-containing protein.	0.875
A0A0D9UZX0	A0A0D9V805	TFIIE beta domain-containing protein.	TFIID_20kDa domain-containing protein.	0.875
A0A0D9UZX0	A0A0D9VAT5	TFIIE beta domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.951
A0A0D9UZX0	A0A0D9VBC7	TFIIE beta domain-containing protein.	RPOL4c domain-containing protein.	0.962
A0A0D9UZX0	A0A0D9VJV2	TFIIE beta domain-containing protein.	BTP domain-containing protein.	0.841
A0A0D9UZX0	A0A0D9VRY5	TFIIE beta domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.956
A0A0D9UZX0	A0A0D9VV56	TFIIE beta domain-containing protein.	Uncharacterized protein.	0.871
A0A0D9UZX0	A0A0D9VVM0	TFIIE beta domain-containing protein.	Uncharacterized protein.	0.882
A0A0D9UZX0	A0A0D9VW73	TFIIE beta domain-containing protein.	BTP domain-containing protein.	0.841
A0A0D9UZX0	A0A0D9W1C3	TFIIE beta domain-containing protein.	Uncharacterized protein.	0.937
A0A0D9UZX0	A0A0D9WBV6	TFIIE beta domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.951
A0A0D9UZX0	A0A0D9WCR9	TFIIE beta domain-containing protein.	Uncharacterized protein.	0.882
A0A0D9UZX0	A0A0D9WEP4	TFIIE beta domain-containing protein.	Uncharacterized protein.	0.969
A0A0D9UZX0	A0A0D9WFE2	TFIIE beta domain-containing protein.	TAFII55_N domain-containing protein.	0.850
A0A0D9UZX0	A0A0D9WGA2	TFIIE beta domain-containing protein.	Uncharacterized protein.	0.918