142 items (Leersia perrieri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9VQN2	Uncharacterized protein. (97 aa)
	A0A0D9WG44	Uncharacterized protein. (548 aa)
	A0A0D9WFE2	TAFII55_N domain-containing protein. (196 aa)
	A0A0D9WEP4	Uncharacterized protein. (389 aa)
	A0A0D9WCR9	Uncharacterized protein. (525 aa)
	A0A0D9WCQ2	Helicase ATP-binding domain-containing protein. (758 aa)
	A0A0D9WBV6	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
	A0A0D9WB97	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (446 aa)
	A0A0D9WB45	DUF4101 domain-containing protein. (830 aa)
	A0A0D9WB44	Uncharacterized protein. (642 aa)
	A0A0D9WA65	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1326 aa)
	A0A0D9WA64	Uncharacterized protein. (568 aa)
	A0A0D9W7F5	Uncharacterized protein. (945 aa)
	A0A0D9W6Z7	General transcription factor IIH subunit. (448 aa)
	A0A0D9VI82	Nuclear cap-binding protein subunit 2. (222 aa)
	A0A0D9VHG4	Uncharacterized protein. (627 aa)
	A0A0D9VGK7	Cyclin N-terminal domain-containing protein. (589 aa)
	A0A0D9VFN0	Uncharacterized protein. (986 aa)
	A0A0D9VEG1	Uncharacterized protein. (630 aa)
	A0A0D9VBV0	Uncharacterized protein; Belongs to the cyclin family. (478 aa)
	A0A0D9VBM7	Uncharacterized protein. (164 aa)
	A0A0D9VBC7	RPOL4c domain-containing protein. (142 aa)
	A0A0D9VAT5	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	A0A0D9V8E3	RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II. (599 aa)
	A0A0D9V8E0	BRCT domain-containing protein. (328 aa)
	A0A0D9V805	TFIID_20kDa domain-containing protein. (443 aa)
	A0A0D9V7Z1	Uncharacterized protein. (861 aa)
	A0A0D9V7R6	TFIID_20kDa domain-containing protein. (544 aa)
	A0A0D9V6W3	Uncharacterized protein. (210 aa)
	A0A0D9W6F9	Uncharacterized protein. (220 aa)
	A0A0D9W5S0	Uncharacterized protein. (664 aa)
	A0A0D9W3M0	Uncharacterized protein. (52 aa)
	A0A0D9W3L9	SANTA domain-containing protein. (357 aa)
	A0A0D9W3L6	Uncharacterized protein. (413 aa)
	A0A0D9W3L3	SANTA domain-containing protein. (555 aa)
	A0A0D9W3H9	Uncharacterized protein. (1076 aa)
	A0A0D9W1C3	Uncharacterized protein. (720 aa)
	A0A0D9W1C0	Uncharacterized protein. (103 aa)
	A0A0D9W0N4	Uncharacterized protein. (367 aa)
	A0A0D9VZ67	Uncharacterized protein. (597 aa)
	A0A0D9VYR0	CYCLIN domain-containing protein; Belongs to the cyclin family. (352 aa)
	A0A0D9VX59	Uncharacterized protein. (348 aa)
	A0A0D9VWV9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1217 aa)
	A0A0D9VW73	BTP domain-containing protein. (376 aa)
	A0A0D9VVY5	Uncharacterized protein. (143 aa)
	A0A0D9VVM0	Uncharacterized protein. (847 aa)
	A0A0D9VV56	Uncharacterized protein. (230 aa)
	A0A0D9VUA5	Ubiquitin-like domain-containing protein. (95 aa)
	A0A0D9VTY5	MIF4G domain-containing protein. (816 aa)
	A0A0D9VRY5	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (499 aa)
	A0A0D9VQR2	Uncharacterized protein. (525 aa)
	A0A0D9VQN3	TFIIB domain-containing protein. (202 aa)
	A0A0D9VQN1	TFIIB-type domain-containing protein. (319 aa)
	A0A0D9VQ55	TFIIE beta domain-containing protein. (456 aa)
	A0A0D9VM55	RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II. (412 aa)
	A0A0D9VM54	RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II. (598 aa)
	A0A0D9VJV2	BTP domain-containing protein. (337 aa)
	A0A0D9VIR6	Uncharacterized protein. (941 aa)
	A0A0D9XZ22	Uncharacterized protein. (1068 aa)
	A0A0D9XZD2	Uncharacterized protein; Belongs to the cyclin family. (557 aa)
	A0A0D9XZP9	TAFII28 domain-containing protein. (214 aa)
	A0A0D9XZZ1	Plus3 domain-containing protein. (635 aa)
	A0A0D9Y0B4	Uncharacterized protein. (262 aa)
	A0A0D9Y0C2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
	A0A0D9Y0Q7	BTP domain-containing protein. (358 aa)
	A0A0D9Y0V2	Uncharacterized protein. (213 aa)
	A0A0D9XX74	TFIIS N-terminal domain-containing protein. (352 aa)
	A0A0D9XWN8	Uncharacterized protein. (220 aa)
	A0A0D9XVS8	Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (119 aa)
	A0A0D9XV56	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (111 aa)
	A0A0D9XV54	Uncharacterized protein. (129 aa)
	A0A0D9XV52	Uncharacterized protein. (167 aa)
	A0A0D9XUX1	Uncharacterized protein. (333 aa)
	A0A0D9XSQ5	TFIIB-type domain-containing protein. (320 aa)
	A0A0D9XSG4	Uncharacterized protein. (1238 aa)
	A0A0D9XRZ6	MAT1 domain-containing protein. (195 aa)
	A0A0D9XQG2	TFIIB-type domain-containing protein. (318 aa)
	A0A0D9XPG3	TFIIS N-terminal domain-containing protein. (660 aa)
	A0A0D9XP89	Uncharacterized protein; Belongs to the cyclin family. (329 aa)
	A0A0D9XNV1	HTH TFE/IIEalpha-type domain-containing protein. (342 aa)
	A0A0D9XJY2	Uncharacterized protein. (221 aa)
	A0A0D9XJD6	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (279 aa)
	A0A0D9XIC0	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (530 aa)
	A0A0D9XI12	RNA_pol_Rpb2_1 domain-containing protein. (428 aa)
	A0A0D9XI11	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (760 aa)
	A0A0D9XG21	TFIIB-type domain-containing protein. (312 aa)
	A0A0D9XDZ9	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. (160 aa)
	A0A0D9XDW8	Uncharacterized protein. (220 aa)
	A0A0D9XXG6	Uncharacterized protein. (72 aa)
	A0A0D9XDL5	Peptidase_M1 domain-containing protein. (1490 aa)
	A0A0D9XC45	Uncharacterized protein; Belongs to the cyclin family. (587 aa)
	A0A0D9XBC9	RPOLD domain-containing protein. (344 aa)
	A0A0D9XA00	Uncharacterized protein. (611 aa)
	A0A0D9V6A4	Uncharacterized protein. (449 aa)
	A0A0D9V4E0	Uncharacterized protein. (803 aa)
	A0A0D9V459	TAFII28 domain-containing protein. (203 aa)
	A0A0D9V3I7	TAFII55_N domain-containing protein. (200 aa)
	A0A0D9V318	Uncharacterized protein. (647 aa)
	A0A0D9V1G9	TAF domain-containing protein. (553 aa)
	A0A0D9V1E3	EAF domain-containing protein. (316 aa)
	A0A0D9V0H5	Uncharacterized protein. (176 aa)
	A0A0D9UZX0	TFIIE beta domain-containing protein. (268 aa)
	A0A0D9UZG0	TFIIB domain-containing protein. (71 aa)
	A0A0D9UZF9	Uncharacterized protein. (78 aa)
	A0A0D9UXY2	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1591 aa)
	A0A0D9UWP5	TFIIS N-terminal domain-containing protein. (535 aa)
	A0A0D9X6Y1	HTH TFE/IIEalpha-type domain-containing protein. (543 aa)
	A0A0D9X6V2	Uncharacterized protein. (467 aa)
	A0A0D9X5A0	TFIIB-type domain-containing protein. (315 aa)
	A0A0D9X4U7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1237 aa)
	A0A0D9X4L2	Uncharacterized protein. (482 aa)
	A0A0D9X3N9	SANTA domain-containing protein. (416 aa)
	A0A0D9X2D0	Uncharacterized protein. (244 aa)
	A0A0D9X1P1	Spt4 domain-containing protein. (206 aa)
	A0A0D9X1G9	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (110 aa)
	A0A0D9X1F5	Phorbol-ester/DAG-type domain-containing protein. (249 aa)
	A0A0D9X1E0	Phorbol-ester/DAG-type domain-containing protein. (221 aa)
	A0A0D9X1D6	Uncharacterized protein. (147 aa)
	A0A0D9X1D5	C1_2 domain-containing protein. (143 aa)
	A0A0D9X1D4	C1_2 domain-containing protein. (288 aa)
	A0A0D9WZ80	TFIIB domain-containing protein. (405 aa)
	A0A0D9WZ78	Uncharacterized protein. (934 aa)
	A0A0D9WYK7	Uncharacterized protein. (103 aa)
	A0A0D9WYF6	Uncharacterized protein. (240 aa)
	A0A0D9WWZ1	Uncharacterized protein. (385 aa)
	A0A0D9WWN5	WD_REPEATS_REGION domain-containing protein. (589 aa)
	A0A0D9WWM7	RNA_pol_L_2 domain-containing protein. (120 aa)
	A0A0D9WW92	Uncharacterized protein. (589 aa)
	A0A0D9WW11	RNA_pol_L_2 domain-containing protein. (120 aa)
	A0A0D9WUP3	Uncharacterized protein. (661 aa)
	A0A0D9WUG6	Uncharacterized protein. (579 aa)
	A0A0D9WTN2	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (146 aa)
	A0A0D9WSM8	Uncharacterized protein. (635 aa)
	A0A0D9WSK5	Uncharacterized protein. (2995 aa)
	A0A0D9WQS3	Uncharacterized protein. (569 aa)
	A0A0D9WQ67	Uncharacterized protein. (388 aa)
	A0A0D9WN39	Transcription elongation factor SPT5. (1053 aa)
	A0A0D9WME4	MAT1 domain-containing protein. (195 aa)
	A0A0D9WJC1	TFIIB-type domain-containing protein. (324 aa)
	A0A0D9WID5	Uncharacterized protein. (1563 aa)
	A0A0D9WI56	Uncharacterized protein. (448 aa)
	A0A0D9WGA2	Uncharacterized protein. (155 aa)

Your Current Organism:

Leersia perrieri

NCBI taxonomy Id: 77586
Other names: L. perrieri, Leersia perrieri (A.Camus) Launert

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9UWP5	A0A0D9UXY2	TFIIS N-terminal domain-containing protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.982
A0A0D9UWP5	A0A0D9V1E3	TFIIS N-terminal domain-containing protein.	EAF domain-containing protein.	0.984
A0A0D9UWP5	A0A0D9V318	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.857
A0A0D9UWP5	A0A0D9V6W3	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.815
A0A0D9UWP5	A0A0D9V7Z1	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.661
A0A0D9UWP5	A0A0D9V8E0	TFIIS N-terminal domain-containing protein.	BRCT domain-containing protein.	0.661
A0A0D9UWP5	A0A0D9V8E3	TFIIS N-terminal domain-containing protein.	RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II.	0.661
A0A0D9UWP5	A0A0D9VBC7	TFIIS N-terminal domain-containing protein.	RPOL4c domain-containing protein.	0.836
A0A0D9UWP5	A0A0D9VEG1	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.857
A0A0D9UWP5	A0A0D9VFN0	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.963
A0A0D9UWP5	A0A0D9VHG4	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.857
A0A0D9UWP5	A0A0D9VI82	TFIIS N-terminal domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.651
A0A0D9UWP5	A0A0D9VIR6	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.661
A0A0D9UWP5	A0A0D9VM54	TFIIS N-terminal domain-containing protein.	RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II.	0.661
A0A0D9UWP5	A0A0D9VM55	TFIIS N-terminal domain-containing protein.	RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II.	0.661
A0A0D9UWP5	A0A0D9VTY5	TFIIS N-terminal domain-containing protein.	MIF4G domain-containing protein.	0.680
A0A0D9UWP5	A0A0D9VVY5	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.802
A0A0D9UWP5	A0A0D9VWV9	TFIIS N-terminal domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.872
A0A0D9UWP5	A0A0D9VX59	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.891
A0A0D9UWP5	A0A0D9VZ67	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.929