20 items (Leersia perrieri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9VRM2	Uncharacterized protein. (245 aa)
	A0A0D9VS02	Uncharacterized protein. (1117 aa)
	A0A0D9VWB5	LisH domain-containing protein. (213 aa)
	A0A0D9W5N4	Uncharacterized protein. (303 aa)
	A0A0D9W717	Uncharacterized protein. (1597 aa)
	A0A0D9XKE1	Uncharacterized protein. (535 aa)
	A0A0D9X4P2	Uncharacterized protein. (1133 aa)
	A0A0D9WRM1	Uncharacterized protein. (386 aa)
	A0A0D9WD36	Uncharacterized protein. (402 aa)
	A0A0D9WBJ5	LisH domain-containing protein. (1915 aa)
	A0A0D9W8V6	Uncharacterized protein. (555 aa)
	A0A0D9XVY4	LisH domain-containing protein. (348 aa)
	A0A0D9XN29	LisH domain-containing protein. (257 aa)
	A0A0D9Y1E1	LisH domain-containing protein. (443 aa)
	A0A0D9UXG1	Uncharacterized protein. (730 aa)
	A0A0D9V0B1	Uncharacterized protein. (517 aa)
	A0A0D9V1J3	Uncharacterized protein. (1170 aa)
	A0A0D9V2R7	Uncharacterized protein. (861 aa)
	A0A0D9V2S0	Uncharacterized protein. (840 aa)
	A0A0D9VF19	Uncharacterized protein. (594 aa)

Your Current Organism:

Leersia perrieri

NCBI taxonomy Id: 77586
Other names: L. perrieri, Leersia perrieri (A.Camus) Launert

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9UXG1	A0A0D9W8V6	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A0D9UXG1	A0A0D9X4P2	Uncharacterized protein.	Uncharacterized protein.	0.405
A0A0D9V2R7	A0A0D9W8V6	Uncharacterized protein.	Uncharacterized protein.	0.404
A0A0D9V2R7	A0A0D9X4P2	Uncharacterized protein.	Uncharacterized protein.	0.412
A0A0D9V2S0	A0A0D9VS02	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A0D9V2S0	A0A0D9W8V6	Uncharacterized protein.	Uncharacterized protein.	0.401
A0A0D9V2S0	A0A0D9X4P2	Uncharacterized protein.	Uncharacterized protein.	0.444
A0A0D9VF19	A0A0D9VRM2	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A0D9VF19	A0A0D9W5N4	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A0D9VF19	A0A0D9WD36	Uncharacterized protein.	Uncharacterized protein.	0.772
A0A0D9VF19	A0A0D9WRM1	Uncharacterized protein.	Uncharacterized protein.	0.932
A0A0D9VRM2	A0A0D9VF19	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A0D9VRM2	A0A0D9WD36	Uncharacterized protein.	Uncharacterized protein.	0.940
A0A0D9VRM2	A0A0D9WRM1	Uncharacterized protein.	Uncharacterized protein.	0.937
A0A0D9VRM2	A0A0D9XKE1	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A0D9VRM2	A0A0D9Y1E1	Uncharacterized protein.	LisH domain-containing protein.	0.439
A0A0D9VS02	A0A0D9V2S0	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A0D9W5N4	A0A0D9VF19	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A0D9W5N4	A0A0D9WD36	Uncharacterized protein.	Uncharacterized protein.	0.935
A0A0D9W5N4	A0A0D9WRM1	Uncharacterized protein.	Uncharacterized protein.	0.933