STRINGSTRING
Xaut_0896 Xaut_0896 Xaut_0897 Xaut_0897 Xaut_0898 Xaut_0898 Xaut_0899 Xaut_0899 Xaut_0900 Xaut_0900 Xaut_0901 Xaut_0901 Xaut_0902 Xaut_0902 Xaut_0903 Xaut_0903 Xaut_0904 Xaut_0904 Xaut_0905 Xaut_0905 Xaut_0906 Xaut_0906 Xaut_0907 Xaut_0907 Xaut_1866 Xaut_1866
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Xaut_0896TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: acr:Acry_2608 phenylacetate-CoA oxygenase, PaaG subunit. (331 aa)
Xaut_0897TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: bbt:BBta_2866 phenylacetic acid degradation protein PaaB. (95 aa)
Xaut_0898TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: acr:Acry_2610 phenylacetate-CoA oxygenase, PaaI subunit. (258 aa)
Xaut_0899TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: bbt:BBta_2868 phenylacetic acid degradation protein PaaD. (168 aa)
Xaut_0900TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rpc:RPC_0687 phenylacetate-CoA oxygenase/reductase, PaaK subunit. (389 aa)
Xaut_0901phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (445 aa)
Xaut_0902TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: rpa:RPA1724 putative phenylacetic acid degredation protein. (165 aa)
Xaut_0903TIGRFAM: phenylacetate degradation probable enoyl-CoA hydratase paaB; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpd:RPD_1831 enoyl-CoA hydratase PaaB. (276 aa)
Xaut_0904TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: aldehyde dehydrogenase; KEGG: pde:Pden_4798 phenylacetic acid degradation protein PaaN. (553 aa)
Xaut_0905TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; KEGG: rpd:RPD_0320 beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (402 aa)
Xaut_0906PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pna:Pnap_2135 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Belongs to the enoyl-CoA hydratase/isomerase family. (704 aa)
Xaut_0907TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: aldehyde dehydrogenase; MaoC domain protein dehydratase; KEGG: rpa:RPA1725 putative aldehyde dehydrogenase. (687 aa)
Xaut_1866KEGG: mag:amb3594 coenzyme F390 synthetase. (440 aa)
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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