STRINGSTRING
Xaut_0426 Xaut_0426 Xaut_0427 Xaut_0427 Xaut_0950 Xaut_0950 Xaut_1423 Xaut_1423 Xaut_4047 Xaut_4047 Xaut_4064 Xaut_4064 Xaut_4290 Xaut_4290 Xaut_4738 Xaut_4738 Xaut_4740 Xaut_4740 Xaut_4741 Xaut_4741 Xaut_4742 Xaut_4742 Xaut_4743 Xaut_4743
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Xaut_0426PFAM: protein of unknown function DUF849; KEGG: mlo:mll1033 hypothetical protein. (321 aa)
Xaut_0427PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: mlo:mll1034 3-hydroxybutyryl-CoA dehydrogenase. (315 aa)
Xaut_0950PFAM: Cupin 2 conserved barrel domain protein; KEGG: rfr:Rfer_3146 cupin 2 protein. (157 aa)
Xaut_1423KEGG: rpe:RPE_2139 hypothetical protein. (169 aa)
Xaut_4047PFAM: protein of unknown function DUF849; KEGG: reu:Reut_B3957 protein of unknown function DUF849, prokaryotic. (285 aa)
Xaut_4064PFAM: cyclase family protein; KEGG: har:HEAR2678 hypothetical protein. (231 aa)
Xaut_4290PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bpa:BPP1725 putative hydroxlacyl-CoA dehydrogenase. (345 aa)
Xaut_4738Alanine racemase; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: reu:Reut_B5848 periplasmic binding protein/LacI transcriptional regulator. (351 aa)
Xaut_4740PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_0358 short-chain dehydrogenase/reductase SDR. (272 aa)
Xaut_4741PFAM: protein of unknown function DUF849; KEGG: reu:Reut_B5853 protein of unknown function DUF849, prokaryotic. (304 aa)
Xaut_4742PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpa:RPA1726 putative oxidoreductase. (344 aa)
Xaut_4743PFAM: Cupin 2 conserved barrel domain protein; KEGG: pol:Bpro_0361 cupin 2, conserved barrel. (110 aa)
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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