STRINGSTRING
Xaut_0102 Xaut_0102 Xaut_1419 Xaut_1419 Xaut_1755 Xaut_1755 Xaut_2010 Xaut_2010 gloB gloB Xaut_2020 Xaut_2020 Xaut_2610 Xaut_2610 Xaut_4172 Xaut_4172
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Xaut_0102PFAM: amine oxidase; KEGG: bbt:BBta_2164 putative amine oxidase. (547 aa)
Xaut_1419PFAM: amine oxidase; KEGG: bbt:BBta_0261 hypothetical protein. (419 aa)
Xaut_1755PFAM: beta-lactamase domain protein; KEGG: eba:ebA2717 putative metallo-beta-lactamase family protein. (235 aa)
Xaut_2010TIGRFAM: Alcohol dehydrogenase zinc-binding type 2; PFAM: oxidoreductase domain protein; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bov:BOV_1026 alcohol dehydrogenase, zinc-containing. (327 aa)
gloBHydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid. (282 aa)
Xaut_2020PFAM: protein of unknown function DUF985; KEGG: rpc:RPC_0507 protein of unknown function DUF985. (154 aa)
Xaut_2610PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sme:SMc03929 putative zinc-type alcohol dehydrogenase transmembrane protein. (375 aa)
Xaut_4172PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rru:Rru_A2466 glyoxalase/bleomycin resistance protein/dioxygenase. (140 aa)
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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