STRINGSTRING
Xaut_0270 Xaut_0270 Xaut_0271 Xaut_0271 Xaut_0272 Xaut_0272 Xaut_0273 Xaut_0273 Xaut_0274 Xaut_0274 Xaut_0275 Xaut_0275 Xaut_0276 Xaut_0276 Xaut_0277 Xaut_0277 Xaut_0438 Xaut_0438 Xaut_0439 Xaut_0439 Xaut_0440 Xaut_0440 Xaut_0441 Xaut_0441 Xaut_0442 Xaut_0442 Xaut_0443 Xaut_0443 Xaut_2233 Xaut_2233 Xaut_2234 Xaut_2234 Xaut_2649 Xaut_2649 Xaut_2650 Xaut_2650 Xaut_2651 Xaut_2651 Xaut_2652 Xaut_2652 Xaut_2653 Xaut_2653 Xaut_2654 Xaut_2654 Xaut_2655 Xaut_2655
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Xaut_0270PFAM: Conjugal transfer TraD family protein; KEGG: rpc:RPC_4518 conjugal transfer TraD. (88 aa)
Xaut_0271KEGG: bbt:BBta_0436 putative conjugal transfert protein, TraC. (112 aa)
Xaut_0272TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; KEGG: rpc:RPC_0149 MobA/MobL protein. (976 aa)
Xaut_0273Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: pde:Pden_0102 phage transcriptional regulator, AlpA. (71 aa)
Xaut_0274KEGG: bbt:BBta_0433 hypothetical protein. (81 aa)
Xaut_0275PFAM: plasmid maintenance system killer; KEGG: sme:SMc02461 putative proteic killer suppression protein. (98 aa)
Xaut_0276Plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: sme:SMc02394 hypothetical protein. (102 aa)
Xaut_0277PFAM: Resolvase domain; Recombinase; KEGG: bbt:BBta_0430 putative resolvase. (551 aa)
Xaut_0438KEGG: mes:Meso_4610 hypothetical protein. (262 aa)
Xaut_0439PFAM: Domain of unknown function DUF1814; KEGG: mes:Meso_4611 hypothetical protein. (305 aa)
Xaut_0440PFAM: Conjugal transfer TraD family protein; KEGG: rpe:RPE_3257 conjugal transfer TraD family protein. (78 aa)
Xaut_0441KEGG: bbt:BBta_0436 putative conjugal transfert protein, TraC. (108 aa)
Xaut_0442TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; KEGG: bbt:BBta_6372 putative conjugal transfer protein, TraA. (985 aa)
Xaut_0443Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: bbt:BBta_6373 putative prophage CP4-57 regulatory protein. (66 aa)
Xaut_2233PFAM: integrase family protein; KEGG: nha:Nham_0294 phage integrase; Belongs to the 'phage' integrase family. (397 aa)
Xaut_2234Hypothetical protein. (177 aa)
Xaut_2649Plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: sme:SMc02394 hypothetical protein. (102 aa)
Xaut_2650PFAM: plasmid maintenance system killer; KEGG: sme:SMc02461 putative proteic killer suppression protein. (98 aa)
Xaut_2651KEGG: bbt:BBta_0433 hypothetical protein. (81 aa)
Xaut_2652Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: pde:Pden_0102 phage transcriptional regulator, AlpA. (71 aa)
Xaut_2653TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; KEGG: rpc:RPC_0149 MobA/MobL protein. (976 aa)
Xaut_2654KEGG: bbt:BBta_0436 putative conjugal transfert protein, TraC. (112 aa)
Xaut_2655PFAM: Conjugal transfer TraD family protein; KEGG: rpc:RPC_4518 conjugal transfer TraD. (88 aa)
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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