STRINGSTRING
Xaut_0167 Xaut_0167 Xaut_0168 Xaut_0168 Xaut_1004 Xaut_1004 Xaut_3479 Xaut_3479
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Xaut_0167KEGG: rpd:RPD_3854 respiratory-chain NADH dehydrogenase, subunit 1. (317 aa)
Xaut_0168KEGG: rle:pRL110295 putative hydrogenase-4 component E. (226 aa)
Xaut_1004PFAM: phenylalanine/histidine ammonia-lyase; KEGG: bam:Bamb_3604 histidine ammonia-lyase. (511 aa)
Xaut_3479TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rpa:RPA0734 NAD-dependent formate dehydrogenase alpha subunit. (946 aa)
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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