STRINGSTRING
Xaut_4357 Xaut_4357 Xaut_4106 Xaut_4106 Xaut_3332 Xaut_3332 Xaut_3369 Xaut_3369 Xaut_2685 Xaut_2685 Xaut_2396 Xaut_2396 Xaut_1133 Xaut_1133 Xaut_0940 Xaut_0940 Xaut_0927 Xaut_0927 Xaut_0492 Xaut_0492 Xaut_0041 Xaut_0041 Xaut_4739 Xaut_4739 Xaut_3262 Xaut_3262 Xaut_2688 Xaut_2688
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Xaut_4357TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: reu:Reut_A1705 catechol dioxygenase, N-terminal. (304 aa)
Xaut_4106PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_3959 5-carboxymethyl-2-hydroxymuconate delta-isomerase. (282 aa)
Xaut_3332TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; KEGG: pfo:Pfl_0911 fumarylacetoacetase. (438 aa)
Xaut_3369PFAM: amidohydrolase 2; KEGG: mes:Meso_1945 amidohydrolase 2. (301 aa)
Xaut_2685PFAM: fumarate lyase; KEGG: mes:Meso_2052 3-carboxy-cis,cis-muconate cycloisomerase. (353 aa)
Xaut_2396PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bbt:BBta_1939 putative fumarylacetoacetate hydrolase. (331 aa)
Xaut_1133TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: reu:Reut_A1705 catechol dioxygenase, N-terminal. (308 aa)
Xaut_0940PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_1490 5-carboxymethyl-2-hydroxymuconate delta-isomerase. (282 aa)
Xaut_09275-carboxymethyl-2-hydroxymuconate Delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bra:BRADO6046 bifunctional enzyme with isomerase/decarboxylase activity. (281 aa)
Xaut_0492PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rpd:RPD_2022 5-carboxymethyl-2-hydroxymuconate delta-isomerase. (257 aa)
Xaut_0041KEGG: bra:BRADO7079 conserved hypothetical protein; putative alcohol dehydrogenase class III. (228 aa)
Xaut_4739PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: ret:RHE_CH02298 probable catechol 1,2-dioxygenase protein. (312 aa)
Xaut_3262PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bov:BOV_0062 fumarylacetoacetate hydrolase family protein. (229 aa)
Xaut_2688TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: bja:blr2333 protocatechuate 3,4-dioxygenase beta chain. (241 aa)
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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