STRINGSTRING
Xaut_2227 Xaut_2227 Xaut_0928 Xaut_0928 mhpB mhpB Xaut_1304 Xaut_1304 Xaut_4320 Xaut_4320
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Xaut_2227PFAM: monooxygenase FAD-binding; KEGG: rha:RHA1_ro04915 monooxygenase. (552 aa)
Xaut_0928PFAM: monooxygenase FAD-binding; KEGG: bra:BRADO6045 putative FAD-binding monooxygenase; putative 3-(3-hydroxy-phenyl)propionate hydroxylase. (509 aa)
mhpBExtradiol ring-cleavage dioxygenase class III protein subunit B; Catalyzes the non-heme iron(II)-dependent oxidative cleavage of 2,3-dihydroxyphenylpropionic acid and 2,3-dihydroxicinnamic acid into 2-hydroxy-6-ketononadienedioate and 2-hydroxy-6- ketononatrienedioate, respectively; Belongs to the LigB/MhpB extradiol dioxygenase family. (313 aa)
Xaut_1304PFAM: monooxygenase FAD-binding; KEGG: bja:bll2329 putative monooxygenase. (535 aa)
Xaut_4320PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rha:RHA1_ro04915 monooxygenase. (522 aa)
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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